SMTL ID : 7vg2.1

Cryo-EM structure of Arabidopsis DCL3 in complex with a 40-bp RNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.1066, D.1070, D.1184, E.1187 Chain C: A.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.1066, A:D.1070, A:D.1184, A:E.1187 CA.2: 6 residues within 4Å: Chain A: E.1275, D.1279, N.1312, D.1367, E.1370 Chain B: U.25 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.1367, A:E.1370

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.1142, C.1144, C.1170, H.1174 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1142, A:C.1144, A:C.1170, A:H.1174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Q. et al., Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science (2021)

Release Date

2021-10-27

Peptides

Dicer-like 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dicer-like 3

Related Entries With Identical Sequence