SMTL ID : 7vg8.1

TYLCV Rep-DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x DT- DA- DA- DT- DA- DT- DT- DA- DC: DNA (5'-((DT)P*(DA)P*(DA)P*(DT)P*(DA)P*(DT)P*(DT)P*(DA)*(DC)P*)-3')(Non-covalent)

DT-DA-DA-DT-DA-DT-DT-DA-DC.1: 28 residues within 4Å: Chain A: F.1, K.2, I.3, F.9, T.11, P.13, N.14, E.43, H.45, E.46, H.51, H.53, Q.67, R.68, H.82, P.83, N.84, I.85, Q.86, A.87, A.88, K.89, S.90, D.93, V.94, F.97, K.100 Ligands: MN.2 Protein-ligand interaction information (PLIP) not available

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: E.43, H.51, H.53 Ligands: DT-DA-DA-DT-DA-DT-DT-DA-DC.1, DT-DA-DA-DT-DA-DT-DT-DA-DC.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.43, A:H.51, A:H.53, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S.Y. et al., structure of TYLCV Rep complexed with ssDNA. To Be Published

Release Date

2022-09-21

Peptides

Replication-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replication-associated protein