SMTL ID : 7vg9.1

Crystal structure of phosphotransbutyrylase from Clostridium acetobutylicum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

homo-octamer

Ligands

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.153, S.241, E.242, E.243 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: G.223, K.226, G.227, C.228 Ligand excluded by PLIP SO4.3: 7 residues within 4Å: Chain A: K.218, M.219, R.222, Q.224 Chain H: E.201, V.202, I.203 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: E.52, I.81 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: N.191, K.193, E.253 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: F.153, D.154, R.155 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: F.153, S.241, E.242, E.243 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain B: K.226, G.227, C.228 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain B: T.277, N.284, A.301, D.302, S.303, T.306 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain B: N.191, K.193 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: K.274, S.299, A.301 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain C: H.20, I.189, E.190, N.191 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain C: F.153, S.241, E.242, E.243 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain C: N.284, A.301, D.302, S.303, T.306 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain C: K.35, E.36 Ligand excluded by PLIP SO4.16: 1 residues within 4Å: Chain C: K.80 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain D: F.153, D.154, R.155 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain D: S.241, E.242, E.243 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain D: K.226, G.227, C.228 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain E: F.153, S.241, E.242, E.243 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain E: T.277, N.284, A.301, D.302, S.303, T.306 Ligand excluded by PLIP SO4.22: 3 residues within 4Å: Chain E: F.153, D.154, R.155 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain E: S.303, H.304 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain E: K.226, G.227, C.228 Ligand excluded by PLIP SO4.25: 4 residues within 4Å: Chain E: K.274, S.299, A.301 Chain F: K.248 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain E: N.191, K.193 Ligand excluded by PLIP SO4.27: 2 residues within 4Å: Chain E: K.35, E.36 Ligand excluded by PLIP SO4.28: 8 residues within 4Å: Chain E: D.47, P.49, V.50, T.298, S.299, R.300, K.307 Ligands: SO4.29 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain E: S.299, R.300 Chain F: H.247 Ligands: SO4.28 Ligand excluded by PLIP SO4.30: 3 residues within 4Å: Chain E: K.117, N.121, T.122 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain E: N.121, A.123, T.124, R.127 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain E: E.149, E.151, D.281, S.282, K.283 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain F: N.284, A.301, D.302, S.303, T.306 Ligand excluded by PLIP SO4.34: 3 residues within 4Å: Chain F: K.226, G.227, C.228 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain F: N.191, K.193 Ligand excluded by PLIP SO4.36: 2 residues within 4Å: Chain F: K.35, E.36 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain F: K.39, G.110, K.111, A.112, D.113 Ligand excluded by PLIP SO4.38: 2 residues within 4Å: Chain F: S.303, H.304 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain F: F.153, S.241, E.242, E.243 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain G: F.153, D.154, R.155 Ligand excluded by PLIP SO4.41: 4 residues within 4Å: Chain G: F.153, S.241, E.242, E.243 Ligand excluded by PLIP SO4.42: 2 residues within 4Å: Chain G: K.226, G.227 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain G: N.191, K.193, E.253 Ligand excluded by PLIP SO4.44: 4 residues within 4Å: Chain H: K.152, F.153, D.154, R.155 Ligand excluded by PLIP SO4.45: 4 residues within 4Å: Chain H: G.223, K.226, G.227, C.228 Ligand excluded by PLIP SO4.46: 2 residues within 4Å: Chain H: S.303, H.304 Ligand excluded by PLIP SO4.47: 3 residues within 4Å: Chain H: N.191, K.193, E.253 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain H: F.153, L.240, S.241, E.242, E.243 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S. et al., Crystal structure and molecular mechanism of phosphotransbutyrylase from Clostridium acetobutylicum . J Microbiol Biotechnol. (2021)

Release Date

2021-10-27

Peptides

Phosphate butyryltransferase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Phosphate butyryltransferase