SMTL ID : 7vgc.1

Crystal structure of prolyl oligopeptidase from Microbulbifer arenaceous complex with a transition state analog inhibitor ZPR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

1 x ZPR: N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL(Covalent)

ZPR.1: 14 residues within 4Å: Chain A: F.198, F.273, Y.276, Y.482, F.485, S.562, N.563, V.588, N.600, W.604, Y.608, R.648, V.649, H.681 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.198, A:F.198, A:F.198, A:F.485, A:F.485, A:N.563, A:V.588, A:W.604, A:W.604, A:Y.608, A:V.649 Hydrogen bonds: A:Y.276, A:N.563, A:N.600, A:R.648 pi-Stacking: A:F.273

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.492, T.495 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: R.561, S.562, H.681 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, P. et al., The structure and molecular dynamics of prolyl oligopeptidase from Microbulbifer arenaceous provide insights into catalytic and regulatory mechanisms. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-05-25

Peptides

prolyl oligopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

prolyl oligopeptidase

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