SMTL ID : 7vhn.1

Spike of SARS-CoV-2 spike protein(1 up)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

31 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: Y.15, F.46, N.48 Ligand excluded by PLIP NAG.2: 4 residues within 4Å: Chain A: N.109, T.111, E.141, F.144 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain A: E.268, N.269 Chain B: K.545 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain A: N.318, P.566, Q.567 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: G.326, F.329, N.330 Ligand excluded by PLIP NAG.6: 1 residues within 4Å: Chain A: N.590 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain A: N.603, T.605 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain A: H.642, N.644 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain A: N.696 Chain C: I.781, D.783 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain A: E.1059, N.1061 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain A: S.99, E.119, N.151, N.152 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain B: Y.15, N.48 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain B: N.109, L.128, E.141, F.144 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain B: E.268, N.269 Chain C: K.545 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain B: N.318, I.319, Q.567 Ligand excluded by PLIP NAG.16: 4 residues within 4Å: Chain B: F.325, G.326, F.329, N.330 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain B: H.642, N.644 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain A: D.783 Chain B: S.695, N.696 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain B: E.1059, N.1061 Ligand excluded by PLIP NAG.20: 4 residues within 4Å: Chain B: Q.102, E.119, N.151, N.152 Ligand excluded by PLIP NAG.21: 3 residues within 4Å: Chain B: N.603, T.605, Q.631 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain C: E.268, N.269 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain C: N.318, P.566, Q.567 Ligand excluded by PLIP NAG.24: 3 residues within 4Å: Chain C: G.326, F.329, N.330 Ligand excluded by PLIP NAG.25: 2 residues within 4Å: Chain C: N.603, T.605 Ligand excluded by PLIP NAG.26: 2 residues within 4Å: Chain C: H.642, N.644 Ligand excluded by PLIP NAG.27: 4 residues within 4Å: Chain B: D.783 Chain C: S.695, N.696, N.697 Ligand excluded by PLIP NAG.28: 3 residues within 4Å: Chain B: Q.882 Chain C: V.692, N.1061 Ligand excluded by PLIP NAG.29: 5 residues within 4Å: Chain C: Y.15, T.16, N.17, S.47, N.48 Ligand excluded by PLIP NAG.30: 4 residues within 4Å: Chain C: N.109, T.111, F.144, Y.147 Ligand excluded by PLIP NAG.31: 4 residues within 4Å: Chain A: R.344 Chain C: N.152, C.153, T.154 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X., Spike of SARS-CoV-2 spike protein(1 up). To Be Published

Release Date

2022-12-07

Peptides

Spike glycoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike glycoprotein

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