SMTL ID : 7vi6.1 (1 other biounit)

Crystal structure of GH3 beta-N-acetylhexosaminidase Amuc_2109 from Akkermansia muciniphila

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.37, S.73 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.37, A:S.73, H2O.7, H2O.8, H2O.8 MG.2: 5 residues within 4Å: Chain A: R.50, C.53, H.55, H.56, P.57 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:R.50, A:C.53, A:H.55, H2O.2, H2O.9

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: G.14, A.15, E.16, E.17 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: H.121, N.137, A.138, T.191 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: R.67, S.80, R.86, G.131 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: G.238, F.239, R.240 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: S.38, V.39 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qian, K. et al., Functional and structural characterization of a GH3 beta-N-acetylhexosaminidase from Akkermansia muciniphila involved in mucin degradation. Biochem.Biophys.Res.Commun. (2022)

Release Date

2021-12-22

Peptides

Beta-N-acetylhexosaminidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-N-acetylhexosaminidase

Related Entries With Identical Sequence