SMTL ID : 7vio.1

Crystal structure of recombinant horse spleen apo-R168H/L169C-Fr

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-24-mer

Ligands

24 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.45 Chain G: K.143, D.146, N.150 Ligand excluded by PLIP GOL.7: 4 residues within 4Å: Chain B: E.45 Chain H: K.143, D.146, N.150 Ligand excluded by PLIP GOL.13: 4 residues within 4Å: Chain C: E.45 Chain F: K.143, D.146, N.150 Ligand excluded by PLIP GOL.19: 4 residues within 4Å: Chain D: E.45 Chain E: K.143, D.146, N.150 Ligand excluded by PLIP GOL.25: 4 residues within 4Å: Chain C: K.143, D.146, N.150 Chain E: E.45 Ligand excluded by PLIP GOL.31: 4 residues within 4Å: Chain D: K.143, D.146, N.150 Chain F: E.45 Ligand excluded by PLIP GOL.37: 4 residues within 4Å: Chain B: K.143, D.146, N.150 Chain G: E.45 Ligand excluded by PLIP GOL.43: 4 residues within 4Å: Chain A: K.143, D.146, N.150 Chain H: E.45 Ligand excluded by PLIP GOL.49: 4 residues within 4Å: Chain I: E.45 Chain N: K.143, D.146, N.150 Ligand excluded by PLIP GOL.55: 4 residues within 4Å: Chain J: E.45 Chain M: K.143, D.146, N.150 Ligand excluded by PLIP GOL.61: 4 residues within 4Å: Chain K: E.45 Chain O: K.143, D.146, N.150 Ligand excluded by PLIP GOL.67: 4 residues within 4Å: Chain L: E.45 Chain P: K.143, D.146, N.150 Ligand excluded by PLIP GOL.73: 4 residues within 4Å: Chain I: K.143, D.146, N.150 Chain M: E.45 Ligand excluded by PLIP GOL.79: 4 residues within 4Å: Chain J: K.143, D.146, N.150 Chain N: E.45 Ligand excluded by PLIP GOL.85: 4 residues within 4Å: Chain L: K.143, D.146, N.150 Chain O: E.45 Ligand excluded by PLIP GOL.91: 4 residues within 4Å: Chain K: K.143, D.146, N.150 Chain P: E.45 Ligand excluded by PLIP GOL.97: 4 residues within 4Å: Chain Q: E.45 Chain U: K.143, D.146, N.150 Ligand excluded by PLIP GOL.103: 4 residues within 4Å: Chain R: E.45 Chain V: K.143, D.146, N.150 Ligand excluded by PLIP GOL.109: 4 residues within 4Å: Chain S: E.45 Chain X: K.143, D.146, N.150 Ligand excluded by PLIP GOL.115: 4 residues within 4Å: Chain T: E.45 Chain W: K.143, D.146, N.150 Ligand excluded by PLIP GOL.121: 4 residues within 4Å: Chain R: K.143, D.146, N.150 Chain U: E.45 Ligand excluded by PLIP GOL.127: 4 residues within 4Å: Chain Q: K.143, D.146, N.150 Chain V: E.45 Ligand excluded by PLIP GOL.133: 4 residues within 4Å: Chain S: K.143, D.146, N.150 Chain W: E.45 Ligand excluded by PLIP GOL.139: 4 residues within 4Å: Chain T: K.143, D.146, N.150 Chain X: E.45 Ligand excluded by PLIP

72 x CD: CADMIUM ION(Non-covalent)

CD.2: 2 residues within 4Å: Chain A: D.80 Chain X: Q.82 Ligand excluded by PLIP CD.3: 5 residues within 4Å: Chain A: E.130 Chain K: E.130 Chain T: E.130 Ligands: CD.63, CD.117 Ligand excluded by PLIP CD.4: 5 residues within 4Å: Chain A: D.127 Chain K: D.127 Chain T: D.127 Ligands: CD.64, CD.118 Ligand excluded by PLIP CD.8: 2 residues within 4Å: Chain B: D.80 Chain U: Q.82 Ligand excluded by PLIP CD.9: 5 residues within 4Å: Chain B: E.130 Chain J: E.130 Chain R: E.130 Ligands: CD.57, CD.105 Ligand excluded by PLIP CD.10: 5 residues within 4Å: Chain B: D.127 Chain J: D.127 Chain R: D.127 Ligands: CD.58, CD.106 Ligand excluded by PLIP CD.14: 2 residues within 4Å: Chain C: D.80 Chain V: Q.82 Ligand excluded by PLIP CD.15: 5 residues within 4Å: Chain C: E.130 Chain L: E.130 Chain Q: E.130 Ligands: CD.69, CD.99 Ligand excluded by PLIP CD.16: 5 residues within 4Å: Chain C: D.127 Chain L: D.127 Chain Q: D.127 Ligands: CD.70, CD.100 Ligand excluded by PLIP CD.20: 2 residues within 4Å: Chain D: D.80 Chain W: Q.82 Ligand excluded by PLIP CD.21: 5 residues within 4Å: Chain D: E.130 Chain I: E.130 Chain S: E.130 Ligands: CD.51, CD.111 Ligand excluded by PLIP CD.22: 5 residues within 4Å: Chain D: D.127 Chain I: D.127 Chain S: D.127 Ligands: CD.52, CD.112 Ligand excluded by PLIP CD.26: 2 residues within 4Å: Chain E: D.80 Chain L: Q.82 Ligand excluded by PLIP CD.27: 5 residues within 4Å: Chain E: E.130 Chain P: E.130 Chain W: E.130 Ligands: CD.93, CD.135 Ligand excluded by PLIP CD.28: 5 residues within 4Å: Chain E: D.127 Chain P: D.127 Chain W: D.127 Ligands: CD.94, CD.136 Ligand excluded by PLIP CD.32: 2 residues within 4Å: Chain F: D.80 Chain I: Q.82 Ligand excluded by PLIP CD.33: 5 residues within 4Å: Chain F: E.130 Chain N: E.130 Chain V: E.130 Ligands: CD.81, CD.129 Ligand excluded by PLIP CD.34: 5 residues within 4Å: Chain F: D.127 Chain N: D.127 Chain V: D.127 Ligands: CD.82, CD.130 Ligand excluded by PLIP CD.38: 2 residues within 4Å: Chain G: D.80 Chain J: Q.82 Ligand excluded by PLIP CD.39: 5 residues within 4Å: Chain G: E.130 Chain M: E.130 Chain X: E.130 Ligands: CD.75, CD.141 Ligand excluded by PLIP CD.40: 5 residues within 4Å: Chain G: D.127 Chain M: D.127 Chain X: D.127 Ligands: CD.76, CD.142 Ligand excluded by PLIP CD.44: 2 residues within 4Å: Chain H: D.80 Chain K: Q.82 Ligand excluded by PLIP CD.45: 5 residues within 4Å: Chain H: E.130 Chain O: E.130 Chain U: E.130 Ligands: CD.87, CD.123 Ligand excluded by PLIP CD.46: 5 residues within 4Å: Chain H: D.127 Chain O: D.127 Chain U: D.127 Ligands: CD.88, CD.124 Ligand excluded by PLIP CD.50: 2 residues within 4Å: Chain F: Q.82 Chain I: D.80 Ligand excluded by PLIP CD.51: 5 residues within 4Å: Chain D: E.130 Chain I: E.130 Chain S: E.130 Ligands: CD.21, CD.111 Ligand excluded by PLIP CD.52: 5 residues within 4Å: Chain D: D.127 Chain I: D.127 Chain S: D.127 Ligands: CD.22, CD.112 Ligand excluded by PLIP CD.56: 2 residues within 4Å: Chain G: Q.82 Chain J: D.80 Ligand excluded by PLIP CD.57: 5 residues within 4Å: Chain B: E.130 Chain J: E.130 Chain R: E.130 Ligands: CD.9, CD.105 Ligand excluded by PLIP CD.58: 5 residues within 4Å: Chain B: D.127 Chain J: D.127 Chain R: D.127 Ligands: CD.10, CD.106 Ligand excluded by PLIP CD.62: 2 residues within 4Å: Chain H: Q.82 Chain K: D.80 Ligand excluded by PLIP CD.63: 5 residues within 4Å: Chain A: E.130 Chain K: E.130 Chain T: E.130 Ligands: CD.3, CD.117 Ligand excluded by PLIP CD.64: 5 residues within 4Å: Chain A: D.127 Chain K: D.127 Chain T: D.127 Ligands: CD.4, CD.118 Ligand excluded by PLIP CD.68: 2 residues within 4Å: Chain E: Q.82 Chain L: D.80 Ligand excluded by PLIP CD.69: 5 residues within 4Å: Chain C: E.130 Chain L: E.130 Chain Q: E.130 Ligands: CD.15, CD.99 Ligand excluded by PLIP CD.70: 5 residues within 4Å: Chain C: D.127 Chain L: D.127 Chain Q: D.127 Ligands: CD.16, CD.100 Ligand excluded by PLIP CD.74: 2 residues within 4Å: Chain M: D.80 Chain S: Q.82 Ligand excluded by PLIP CD.75: 5 residues within 4Å: Chain G: E.130 Chain M: E.130 Chain X: E.130 Ligands: CD.39, CD.141 Ligand excluded by PLIP CD.76: 5 residues within 4Å: Chain G: D.127 Chain M: D.127 Chain X: D.127 Ligands: CD.40, CD.142 Ligand excluded by PLIP CD.80: 2 residues within 4Å: Chain N: D.80 Chain R: Q.82 Ligand excluded by PLIP CD.81: 5 residues within 4Å: Chain F: E.130 Chain N: E.130 Chain V: E.130 Ligands: CD.33, CD.129 Ligand excluded by PLIP CD.82: 5 residues within 4Å: Chain F: D.127 Chain N: D.127 Chain V: D.127 Ligands: CD.34, CD.130 Ligand excluded by PLIP CD.86: 2 residues within 4Å: Chain O: D.80 Chain Q: Q.82 Ligand excluded by PLIP CD.87: 5 residues within 4Å: Chain H: E.130 Chain O: E.130 Chain U: E.130 Ligands: CD.45, CD.123 Ligand excluded by PLIP CD.88: 5 residues within 4Å: Chain H: D.127 Chain O: D.127 Chain U: D.127 Ligands: CD.46, CD.124 Ligand excluded by PLIP CD.92: 2 residues within 4Å: Chain P: D.80 Chain T: Q.82 Ligand excluded by PLIP CD.93: 5 residues within 4Å: Chain E: E.130 Chain P: E.130 Chain W: E.130 Ligands: CD.27, CD.135 Ligand excluded by PLIP CD.94: 5 residues within 4Å: Chain E: D.127 Chain P: D.127 Chain W: D.127 Ligands: CD.28, CD.136 Ligand excluded by PLIP CD.98: 2 residues within 4Å: Chain O: Q.82 Chain Q: D.80 Ligand excluded by PLIP CD.99: 5 residues within 4Å: Chain C: E.130 Chain L: E.130 Chain Q: E.130 Ligands: CD.15, CD.69 Ligand excluded by PLIP CD.100: 5 residues within 4Å: Chain C: D.127 Chain L: D.127 Chain Q: D.127 Ligands: CD.16, CD.70 Ligand excluded by PLIP CD.104: 2 residues within 4Å: Chain N: Q.82 Chain R: D.80 Ligand excluded by PLIP CD.105: 5 residues within 4Å: Chain B: E.130 Chain J: E.130 Chain R: E.130 Ligands: CD.9, CD.57 Ligand excluded by PLIP CD.106: 5 residues within 4Å: Chain B: D.127 Chain J: D.127 Chain R: D.127 Ligands: CD.10, CD.58 Ligand excluded by PLIP CD.110: 2 residues within 4Å: Chain M: Q.82 Chain S: D.80 Ligand excluded by PLIP CD.111: 5 residues within 4Å: Chain D: E.130 Chain I: E.130 Chain S: E.130 Ligands: CD.21, CD.51 Ligand excluded by PLIP CD.112: 5 residues within 4Å: Chain D: D.127 Chain I: D.127 Chain S: D.127 Ligands: CD.22, CD.52 Ligand excluded by PLIP CD.116: 2 residues within 4Å: Chain P: Q.82 Chain T: D.80 Ligand excluded by PLIP CD.117: 5 residues within 4Å: Chain A: E.130 Chain K: E.130 Chain T: E.130 Ligands: CD.3, CD.63 Ligand excluded by PLIP CD.118: 5 residues within 4Å: Chain A: D.127 Chain K: D.127 Chain T: D.127 Ligands: CD.4, CD.64 Ligand excluded by PLIP CD.122: 2 residues within 4Å: Chain B: Q.82 Chain U: D.80 Ligand excluded by PLIP CD.123: 5 residues within 4Å: Chain H: E.130 Chain O: E.130 Chain U: E.130 Ligands: CD.45, CD.87 Ligand excluded by PLIP CD.124: 5 residues within 4Å: Chain H: D.127 Chain O: D.127 Chain U: D.127 Ligands: CD.46, CD.88 Ligand excluded by PLIP CD.128: 2 residues within 4Å: Chain C: Q.82 Chain V: D.80 Ligand excluded by PLIP CD.129: 5 residues within 4Å: Chain F: E.130 Chain N: E.130 Chain V: E.130 Ligands: CD.33, CD.81 Ligand excluded by PLIP CD.130: 5 residues within 4Å: Chain F: D.127 Chain N: D.127 Chain V: D.127 Ligands: CD.34, CD.82 Ligand excluded by PLIP CD.134: 2 residues within 4Å: Chain D: Q.82 Chain W: D.80 Ligand excluded by PLIP CD.135: 5 residues within 4Å: Chain E: E.130 Chain P: E.130 Chain W: E.130 Ligands: CD.27, CD.93 Ligand excluded by PLIP CD.136: 5 residues within 4Å: Chain E: D.127 Chain P: D.127 Chain W: D.127 Ligands: CD.28, CD.94 Ligand excluded by PLIP CD.140: 2 residues within 4Å: Chain A: Q.82 Chain X: D.80 Ligand excluded by PLIP CD.141: 5 residues within 4Å: Chain G: E.130 Chain M: E.130 Chain X: E.130 Ligands: CD.39, CD.75 Ligand excluded by PLIP CD.142: 5 residues within 4Å: Chain G: D.127 Chain M: D.127 Chain X: D.127 Ligands: CD.40, CD.76 Ligand excluded by PLIP

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: Q.6, N.7 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain A: L.24, S.27, Y.28, R.59 Chain X: L.24, R.59 Ligands: SO4.144 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain B: Q.6, N.7 Ligand excluded by PLIP SO4.12: 7 residues within 4Å: Chain B: L.24, S.27, Y.28, R.59 Chain U: L.24, R.59 Ligands: SO4.126 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain C: Q.6, N.7 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain C: L.24, S.27, Y.28, R.59 Chain V: L.24, R.59 Ligands: SO4.132 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain D: Q.6, N.7 Ligand excluded by PLIP SO4.24: 7 residues within 4Å: Chain D: L.24, S.27, Y.28, R.59 Chain W: L.24, R.59 Ligands: SO4.138 Ligand excluded by PLIP SO4.29: 2 residues within 4Å: Chain E: Q.6, N.7 Ligand excluded by PLIP SO4.30: 7 residues within 4Å: Chain E: L.24, S.27, Y.28, R.59 Chain L: L.24, R.59 Ligands: SO4.72 Ligand excluded by PLIP SO4.35: 2 residues within 4Å: Chain F: Q.6, N.7 Ligand excluded by PLIP SO4.36: 7 residues within 4Å: Chain F: L.24, S.27, Y.28, R.59 Chain I: L.24, R.59 Ligands: SO4.54 Ligand excluded by PLIP SO4.41: 2 residues within 4Å: Chain G: Q.6, N.7 Ligand excluded by PLIP SO4.42: 7 residues within 4Å: Chain G: L.24, S.27, Y.28, R.59 Chain J: L.24, R.59 Ligands: SO4.60 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain H: Q.6, N.7 Ligand excluded by PLIP SO4.48: 7 residues within 4Å: Chain H: L.24, S.27, Y.28, R.59 Chain K: L.24, R.59 Ligands: SO4.66 Ligand excluded by PLIP SO4.53: 2 residues within 4Å: Chain I: Q.6, N.7 Ligand excluded by PLIP SO4.54: 7 residues within 4Å: Chain F: L.24, R.59 Chain I: L.24, S.27, Y.28, R.59 Ligands: SO4.36 Ligand excluded by PLIP SO4.59: 2 residues within 4Å: Chain J: Q.6, N.7 Ligand excluded by PLIP SO4.60: 7 residues within 4Å: Chain G: L.24, R.59 Chain J: L.24, S.27, Y.28, R.59 Ligands: SO4.42 Ligand excluded by PLIP SO4.65: 2 residues within 4Å: Chain K: Q.6, N.7 Ligand excluded by PLIP SO4.66: 7 residues within 4Å: Chain H: L.24, R.59 Chain K: L.24, S.27, Y.28, R.59 Ligands: SO4.48 Ligand excluded by PLIP SO4.71: 2 residues within 4Å: Chain L: Q.6, N.7 Ligand excluded by PLIP SO4.72: 7 residues within 4Å: Chain E: L.24, R.59 Chain L: L.24, S.27, Y.28, R.59 Ligands: SO4.30 Ligand excluded by PLIP SO4.77: 2 residues within 4Å: Chain M: Q.6, N.7 Ligand excluded by PLIP SO4.78: 7 residues within 4Å: Chain M: L.24, S.27, Y.28, R.59 Chain S: L.24, R.59 Ligands: SO4.114 Ligand excluded by PLIP SO4.83: 2 residues within 4Å: Chain N: Q.6, N.7 Ligand excluded by PLIP SO4.84: 7 residues within 4Å: Chain N: L.24, S.27, Y.28, R.59 Chain R: L.24, R.59 Ligands: SO4.108 Ligand excluded by PLIP SO4.89: 2 residues within 4Å: Chain O: Q.6, N.7 Ligand excluded by PLIP SO4.90: 7 residues within 4Å: Chain O: L.24, S.27, Y.28, R.59 Chain Q: L.24, R.59 Ligands: SO4.102 Ligand excluded by PLIP SO4.95: 2 residues within 4Å: Chain P: Q.6, N.7 Ligand excluded by PLIP SO4.96: 7 residues within 4Å: Chain P: L.24, S.27, Y.28, R.59 Chain T: L.24, R.59 Ligands: SO4.120 Ligand excluded by PLIP SO4.101: 2 residues within 4Å: Chain Q: Q.6, N.7 Ligand excluded by PLIP SO4.102: 7 residues within 4Å: Chain O: L.24, R.59 Chain Q: L.24, S.27, Y.28, R.59 Ligands: SO4.90 Ligand excluded by PLIP SO4.107: 2 residues within 4Å: Chain R: Q.6, N.7 Ligand excluded by PLIP SO4.108: 7 residues within 4Å: Chain N: L.24, R.59 Chain R: L.24, S.27, Y.28, R.59 Ligands: SO4.84 Ligand excluded by PLIP SO4.113: 2 residues within 4Å: Chain S: Q.6, N.7 Ligand excluded by PLIP SO4.114: 7 residues within 4Å: Chain M: L.24, R.59 Chain S: L.24, S.27, Y.28, R.59 Ligands: SO4.78 Ligand excluded by PLIP SO4.119: 2 residues within 4Å: Chain T: Q.6, N.7 Ligand excluded by PLIP SO4.120: 7 residues within 4Å: Chain P: L.24, R.59 Chain T: L.24, S.27, Y.28, R.59 Ligands: SO4.96 Ligand excluded by PLIP SO4.125: 2 residues within 4Å: Chain U: Q.6, N.7 Ligand excluded by PLIP SO4.126: 7 residues within 4Å: Chain B: L.24, R.59 Chain U: L.24, S.27, Y.28, R.59 Ligands: SO4.12 Ligand excluded by PLIP SO4.131: 2 residues within 4Å: Chain V: Q.6, N.7 Ligand excluded by PLIP SO4.132: 7 residues within 4Å: Chain C: L.24, R.59 Chain V: L.24, S.27, Y.28, R.59 Ligands: SO4.18 Ligand excluded by PLIP SO4.137: 2 residues within 4Å: Chain W: Q.6, N.7 Ligand excluded by PLIP SO4.138: 7 residues within 4Å: Chain D: L.24, R.59 Chain W: L.24, S.27, Y.28, R.59 Ligands: SO4.24 Ligand excluded by PLIP SO4.143: 2 residues within 4Å: Chain X: Q.6, N.7 Ligand excluded by PLIP SO4.144: 7 residues within 4Å: Chain A: L.24, R.59 Chain X: L.24, S.27, Y.28, R.59 Ligands: SO4.6 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, C. et al., Design of a gold clustering site in an engineered apo-ferritin cage. Commun Chem (2022)

Release Date

2022-06-08

Peptides

Ferritin light chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin light chain

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