SMTL ID : 7vjs.1

Human AlkB homolog ALKBH6 in complex with Tris and Ni

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.114, D.116, H.182 Ligands: TRS.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.114, A:D.116, A:H.182

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 10 residues within 4Å: Chain A: L.101, N.103, I.111, H.114, D.116, V.124, H.182, T.222, R.224 Ligands: NI.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.103, A:N.103, A:D.116 Water bridges: A:R.56, A:R.56, A:R.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, L. et al., Structural insights into the interactions and epigenetic functions of human nucleic acid repair protein ALKBH6. J.Biol.Chem. (2022)

Release Date

2022-02-02

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6

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