SMTL ID : 7vjv.1

Human AlkB homolog ALKBH6 in complex with alpha-katoglutarate and Mn

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.114, D.116, H.182 Ligands: AKG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.114, A:D.116, A:H.182, H2O.1

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 12 residues within 4Å: Chain A: L.101, N.103, Y.105, I.111, H.114, D.116, T.126, H.182, I.184, R.218, S.220 Ligands: MN.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.103, A:Y.105, A:Y.105, A:S.220 Water bridges: A:R.56, A:N.103, A:T.126, A:R.224, A:R.224 Salt bridges: A:H.114, A:R.218, A:R.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, L. et al., Structural insights into the interactions and epigenetic functions of human nucleic acid repair protein ALKBH6. J.Biol.Chem. (2022)

Release Date

2022-02-02

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6

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