SMTL ID : 7vkn.1

Crystal structure of TrkA (G595R) kinase with repotrectinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x 7GI: Repotrectinib(Non-covalent)

7GI.1: 16 residues within 4Å: Chain A: G.47, V.54, A.72, F.119, E.120, Y.121, M.122, R.125, D.126, R.184, N.185, C.186, L.187, G.197, D.198, R.203 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.72, A:F.119, A:D.126, A:L.187, A:L.187, A:D.198 Hydrogen bonds: A:M.122, A:R.203 pi-Cation interactions: A:R.203

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: T.252, K.255, P.279, R.280 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.280 Salt bridges: A:K.255 SO4.3: 6 residues within 4Å: Chain A: H.101, S.162, Q.163, A.166, H.308, Q.312 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.312 Salt bridges: A:H.101, A:H.308 SO4.4: 4 residues within 4Å: Chain A: R.132, K.255, Q.256, Y.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.256 Salt bridges: A:R.132 SO4.5: 4 residues within 4Å: Chain A: L.42, K.43, W.44, F.55 No protein-ligand interaction detected (PLIP) SO4.6: 3 residues within 4Å: Chain A: L.42, F.55, P.114 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, B.W. et al., Molecular Characteristics of Repotrectinib That Enable Potent Inhibition of TRK Fusion Proteins and Resistant Mutations. Mol.Cancer Ther. (2021)

Release Date

2021-10-13

Peptides

Tyrosine-protein kinase receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase receptor

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