SMTL ID : 7vlq.1

Crystal structure of SARS-Cov-2 main protease in complex with PF07321332 in spacegroup P212121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

homo-dimer

Ligands

2 x 4WI: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide(Covalent)

4WI.1: 20 residues within 4Å: Chain A: H.39, M.47, F.138, L.139, N.140, G.141, S.142, C.143, H.161, H.162, M.163, E.164, L.165, P.166, H.170, D.185, R.186, Q.187, T.188, Q.190 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.39, A:M.163 Hydrogen bonds: A:G.141, A:S.142, A:C.143, A:H.162, A:E.164, A:E.164, A:E.164, A:E.164 Halogen bonds: A:Q.190 4WI.2: 19 residues within 4Å: Chain B: H.39, M.47, F.138, L.139, N.140, G.141, S.142, C.143, H.161, H.162, M.163, E.164, L.165, P.166, H.170, R.186, Q.187, T.188, Q.190 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:H.39 Hydrogen bonds: B:G.141, B:S.142, B:S.142, B:C.143, B:H.162, B:E.164, B:E.164, B:E.164, B:E.164, B:T.188 Halogen bonds: B:Q.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Structural Basis of the Main Proteases of Coronavirus Bound to Drug Candidate PF-07321332. J.Virol. (2022)

Release Date

2022-04-06

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase