SMTL ID : 7vm5.1

Crystal structure of uPA in complex with 4-guanidinobenzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 4 residues within 4Å: Chain A: S.26, V.27, T.28, N.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.26 Water bridges: A:N.67

1 x GBS: 4-carbamimidamidobenzoic acid(Non-covalent)

GBS.2: 16 residues within 4Å: Chain A: H.46, D.192, S.193, C.194, Q.195, S.198, V.216, S.217, W.218, G.219, R.220, G.221, C.222, K.227, P.228, G.229 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.216 Hydrogen bonds: A:S.193, A:S.193, A:G.196, A:R.220 Water bridges: A:D.192, A:D.197, A:S.198, A:S.198, A:S.198 Salt bridges: A:H.46, A:D.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Structural study of the uPA-nafamostat complex reveals a covalent inhibitory mechanism of nafamostat. Biophys.J. (2022)

Release Date

2022-10-12

Peptides

Urokinase-type plasminogen activator: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
U

Urokinase-type plasminogen activator

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