SMTL ID : 7vnb.1

Crystal structure of the SARS-CoV-2 RBD in complex with a human single domain antibody n3113

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain B: F.20, G.21, N.25, L.50, S.53 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.50 Hydrogen bonds: B:S.53, B:S.53 Water bridges: B:G.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, Z. et al., A non-ACE2 competing human single-domain antibody confers broad neutralization against SARS-CoV-2 and circulating variants. Signal Transduct Target Ther (2021)

Release Date

2021-11-24

Peptides

n3113: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

n3113

Spike protein S1

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