- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 2 x ORN: L-ornithine(Non-covalent)
ORN.2: 13 residues within 4Å:- Chain A: T.30, I.63, F.151, R.154, E.236, Q.267, K.293
- Chain B: T.92, D.93, S.319, N.320, T.321
- Ligands: PLP.1
10 PLIP interactions:7 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:F.151, A:E.236
- Hydrogen bonds: A:T.30, A:E.236, A:K.293, B:D.93, B:S.319, B:T.321
- Water bridges: A:Q.168
- Salt bridges: A:R.154
ORN.7: 13 residues within 4Å:- Chain C: T.30, I.63, F.151, R.154, E.236, Q.267, K.293
- Chain D: T.92, D.93, S.319, N.320, T.321
- Ligands: PLP.6
10 PLIP interactions:3 interactions with chain D, 7 interactions with chain C- Hydrogen bonds: D:T.92, D:D.93, D:S.319, C:E.236, C:E.236, C:K.293
- Hydrophobic interactions: C:F.151, C:E.236
- Water bridges: C:Q.168
- Salt bridges: C:R.154
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 5 residues within 4Å:- Chain A: Y.197, R.355, E.359, V.371, R.372
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.355, A:R.355, A:V.371
- Water bridges: A:K.362, A:K.362, A:K.362, A:K.362
GOL.8: 5 residues within 4Å:- Chain C: Y.197, R.355, E.359, V.371, R.372
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:R.355, C:R.355, C:V.371
- Water bridges: C:K.362, C:K.362, C:K.362, C:K.362
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: E.351, R.355, G.373, L.374, W.378
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.355
- Water bridges: A:E.351
EDO.9: 5 residues within 4Å:- Chain C: E.351, R.355, G.373, L.374, W.378
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.355
- Water bridges: C:E.351, C:E.351
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawakami, R. et al., Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii. Int.J.Biol.Macromol. (2022)
- Release Date
- 2022-03-30
- Peptides
- 454aa long hypothetical 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 2 x ORN: L-ornithine(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawakami, R. et al., Crystal structure of a novel type of ornithine delta-aminotransferase from the hyperthermophilic archaeon Pyrococcus horikoshii. Int.J.Biol.Macromol. (2022)
- Release Date
- 2022-03-30
- Peptides
- 454aa long hypothetical 4-aminobutyrate aminotransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B