SMTL ID : 7vo0.1

Streptomyces coelicolor zinc uptake regulator complexed with zinc and DNA (trimer of dimers)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

18 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain C: C.110, C.113, K.115, C.150, C.153 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.110, C:C.113, C:C.150, C:C.153 ZN.2: 4 residues within 4Å: Chain C: D.85, C.99, H.105, H.107 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.85, C:C.99, C:H.105, C:H.107 ZN.3: 4 residues within 4Å: Chain C: H.104, H.106, E.125, H.142 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.104, C:H.106, C:E.125, C:H.142 ZN.4: 6 residues within 4Å: Chain D: C.110, C.113, K.115, C.150, D.152, C.153 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.110, D:C.113, D:C.150, D:C.153 ZN.5: 4 residues within 4Å: Chain D: D.85, C.99, H.105, H.107 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.85, D:C.99, D:H.105, D:H.107 ZN.6: 5 residues within 4Å: Chain D: H.104, H.106, V.124, E.125, H.142 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.104, D:H.106, D:E.125, D:H.142 ZN.7: 5 residues within 4Å: Chain E: C.110, C.113, C.150, D.152, C.153 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.110, E:C.113, E:C.150, E:C.153 ZN.8: 4 residues within 4Å: Chain E: D.85, C.99, H.105, H.107 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.85, E:C.99, E:H.105, E:H.107 ZN.9: 4 residues within 4Å: Chain E: H.104, H.106, E.125, H.142 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.104, E:H.106, E:E.125, E:E.125, E:H.142 ZN.10: 6 residues within 4Å: Chain F: C.110, C.113, K.115, C.150, D.152, C.153 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.110, F:C.113, F:C.150, F:C.153 ZN.11: 4 residues within 4Å: Chain F: D.85, C.99, H.105, H.107 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.85, F:C.99, F:H.105, F:H.107 ZN.12: 4 residues within 4Å: Chain F: H.104, H.106, E.125, H.142 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.104, F:H.106, F:E.125, F:H.142 ZN.13: 4 residues within 4Å: Chain G: C.110, C.113, C.150, C.153 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.110, G:C.113, G:C.150, G:C.153 ZN.14: 5 residues within 4Å: Chain G: D.85, C.99, H.105, H.107, E.118 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.85, G:C.99, G:H.105, G:H.107 ZN.15: 4 residues within 4Å: Chain G: H.104, H.106, E.125, H.142 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.104, G:H.106, G:E.125, G:H.142 ZN.16: 5 residues within 4Å: Chain H: C.110, C.113, C.150, D.152, C.153 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.110, H:C.113, H:C.150, H:C.153 ZN.17: 4 residues within 4Å: Chain H: D.85, C.99, H.105, H.107 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.85, H:C.99, H:H.105, H:H.107 ZN.18: 5 residues within 4Å: Chain H: H.104, H.106, V.124, E.125, H.142 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.104, H:H.106, H:E.125, H:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Structural basis of Streptomyces transcription activation by zinc uptake regulator. Nucleic Acids Res. (2022)

Release Date

2022-08-03

Peptides

Putative metal uptake regulation protein: CDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
G

D
H

E
K

F
L

G
M

H
N

Putative metal uptake regulation protein

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