SMTL ID : 7vo8.1

Structure of AtHPPD complexed with LSY-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.192, H.274, E.360 Ligands: 7RQ.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.192, A:H.274, A:E.360, H2O.3 CO.3: 4 residues within 4Å: Chain B: H.192, H.274, E.360 Ligands: 7RQ.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.192, B:H.274, B:E.360, H2O.11

2 x 7RQ: N-[6-[[9-(dimethylamino)-12H-benzo[a]phenoxazin-5-yl]amino]hexyl]-4-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-[oxidanyl(oxidanylidene)-$l^4-azanyl]benzamide(Non-covalent)

7RQ.2: 18 residues within 4Å: Chain A: H.192, V.194, S.233, P.246, N.248, Q.273, H.274, F.347, F.358, E.360, F.385, G.386, K.387, N.389, F.390, L.393, I.397 Ligands: CO.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.246, A:F.347, A:F.347, A:F.385, A:K.387, A:F.390 Water bridges: A:N.248, A:Q.345 7RQ.4: 18 residues within 4Å: Chain B: H.192, V.194, S.233, P.246, N.248, Q.273, H.274, F.347, F.358, E.360, F.385, G.386, K.387, N.389, F.390, L.393, I.397 Ligands: CO.3 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:P.246, B:F.347, B:F.347, B:F.385, B:K.387, B:F.390 Water bridges: B:N.248, B:Q.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, Y.X. et al., In vivo diagnostics of abiotic plant stress responses via in situ real-time fluorescence imaging. Plant Physiol. (2022)

Release Date

2022-09-21

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase