SMTL ID : 7vod.1

Crystal structure of 5-HT2AR in complex with cariprazine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.207, D.211 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.207, A:D.211, A:D.211

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 8 residues within 4Å: Chain A: I.314, T.315, M.318, C.326, N.327, V.330, I.331, L.334 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.314, A:T.315, A:V.330, A:I.331 CLR.3: 6 residues within 4Å: Chain A: A.24, I.27, L.28, M.31, Y.367, Y.372 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.27, A:I.27, A:L.28 Hydrogen bonds: A:Y.372 CLR.7: 4 residues within 4Å: Chain A: S.34, L.56, L.60 Ligands: OLC.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.56, A:L.60 Hydrogen bonds: A:S.34

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.4: 10 residues within 4Å: Chain A: V.90, I.140, P.143, L.163, F.168, G.172, S.173, S.176, F.177, N.316 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.143, A:F.168 Hydrogen bonds: A:S.176, A:N.316 OLC.5: 7 residues within 4Å: Chain A: P.78, K.80, L.81, V.84, Y.87, L.149 Ligands: OLC.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.78, A:K.80, A:V.84, A:Y.87, A:L.149 Hydrogen bonds: A:K.80 OLC.6: 7 residues within 4Å: Chain A: Y.87, L.91, F.127, I.130, W.134 Ligands: OLC.5, CLR.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.127, A:F.127, A:I.130, A:W.134 Hydrogen bonds: A:Y.87

1 x 7RU: 3-[4-[2-[4-[2,3-bis(chloranyl)phenyl]piperazin-1-yl]ethyl]cyclohexyl]-1,1-dimethyl-urea(Non-covalent)

7RU.8: 14 residues within 4Å: Chain A: W.85, D.89, S.93, C.161, L.162, F.177, L.181, F.305, V.306, W.309, F.312, F.313, V.339, Y.343 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.85, A:W.85, A:L.162, A:F.177, A:W.309, A:F.312, A:F.312, A:F.313 Salt bridges: A:D.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Structure-based design of a novel third-generation antipsychotic drug lead with potential antidepressant properties. Nat.Neurosci. (2022)

Release Date

2021-12-22

Peptides

5-hydroxytryptamine receptor 2A,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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5-hydroxytryptamine receptor 2A,Soluble cytochrome b562

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