SMTL ID : 7vpb.1

Crystal structure of a novel hydrolase in apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: E.128, Q.129, S.132, R.134 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.129 Water bridges: A:R.134, A:R.134 Salt bridges: A:R.134 ACT.3: 4 residues within 4Å: Chain B: E.128, Q.129, S.132, R.134 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:E.128 Hydrogen bonds: B:Q.129 Water bridges: B:Q.129, B:S.133, B:R.134 Salt bridges: B:R.134

1 x J1K: 4-(2-hydroxyethylcarbamoyl)benzoic acid(Non-covalent)

J1K.2: 15 residues within 4Å: Chain A: G.78, F.79, W.151, S.152, M.153, T.200, H.230 Chain B: G.78, F.79, V.80, W.151, S.152, M.153, T.200, H.230 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.79, A:T.200, B:V.80, B:T.200 Hydrogen bonds: A:F.79, A:S.152, A:M.153, B:F.79, B:S.152, B:M.153 Salt bridges: A:H.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Structural insight and engineering of a plastic degrading hydrolase Ple629. Biochem.Biophys.Res.Commun. (2022)

Release Date

2022-10-19

Peptides

plastic degrading hydrolase Ple629: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

plastic degrading hydrolase Ple629

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