SMTL ID : 7vpi.1

Cryo-EM structure of the human ATP13A2 (E1-ATP state)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.50 Å

Oligo State

monomer

Ligands

1 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.1: 20 residues within 4Å: Chain A: D.517, K.518, T.519, M.577, F.634, S.636, Q.639, M.641, K.658, G.659, S.660, R.690, V.692, T.754, G.755, D.756, R.857, K.863, N.885 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.517, A:K.518, A:T.519, A:T.519, A:T.519, A:K.658, A:R.690, A:R.690, A:G.755, A:D.756, A:D.756, A:R.857, A:R.857, A:K.863, A:K.863, A:N.885 pi-Stacking: A:F.634, A:F.634

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.517, T.519, D.882 Ligands: ACP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.517, A:T.519

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomita, A. et al., Cryo-EM reveals mechanistic insights into lipid-facilitated polyamine export by human ATP13A2. Mol.Cell (2021)

Release Date

2021-12-29

Peptides

Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Polyamine-transporting ATPase 13A2

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