SMTL ID : 7vpj.1

Cryo-EM structure of the human ATP13A2 (E1P-ADP state)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.54 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: D.517, T.519, D.882, G.883, N.885 Ligands: ALF.4 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 14 residues within 4Å: Chain A: T.519, M.577, F.634, S.636, R.640, M.641, K.658, G.659, S.660, R.690, G.755, D.756, R.857 Ligands: ALF.4 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.519, A:T.519, A:T.519, A:R.690, A:G.755, A:G.755, A:D.756, A:R.857 Salt bridges: A:R.690 pi-Stacking: A:F.634, A:F.634

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.1037, T.1039, V.1040 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.1037, A:T.1039

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.4: 11 residues within 4Å: Chain A: D.517, K.518, T.519, V.753, T.754, G.755, K.863, N.885, D.886 Ligands: MG.1, ADP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.517

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomita, A. et al., Cryo-EM reveals mechanistic insights into lipid-facilitated polyamine export by human ATP13A2. Mol.Cell (2021)

Release Date

2021-12-29

Peptides

Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Polyamine-transporting ATPase 13A2

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