SMTL ID : 7vrj.1

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF Allochromatium tepidum

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-9-10-6-6-1-mer

Ligands

4 x HEC: HEME C(Non-covalent)(Covalent)

HEC.1: 18 residues within 4Å: Chain A: Y.76, Q.77, N.78, V.79, Q.80, V.81, L.82, F.90, M.94, T.98, C.107, C.110, H.111, W.116, K.124, S.127, R.128 Ligands: HEC.2 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:Y.76, A:W.116, A:W.116, A:W.116, A:K.124 Hydrogen bonds: A:Q.77, A:N.78, A:N.78, A:Q.80, A:V.81, A:L.82 Salt bridges: A:R.128 pi-Stacking: A:F.90 Metal complexes: A:H.111 HEC.2: 20 residues within 4Å: Chain A: V.101, Y.109, Y.122, T.123, V.126, M.130, M.133, V.134, T.153, C.154, C.157, H.158, P.162, V.163, P.164, V.167, R.297, F.305, V.307 Ligands: HEC.1 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:V.101, A:V.126, A:M.130, A:P.164, A:V.167, A:F.305 Salt bridges: A:R.297, A:R.297 Metal complexes: A:H.158 HEC.3: 21 residues within 4Å: Chain A: I.212, R.213, V.214, I.215, T.234, M.238, I.241, V.247, N.248, C.249, C.252, H.253, F.258, Y.259, R.268, A.271, W.272, R.276 Chain B: L.170 Chain C: I.190, Y.316 16 PLIP interactions: 14 interactions with chain A, 1 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: A:T.234, A:M.238, A:I.241, A:V.247, A:F.258, A:F.258, A:F.258, A:R.268, A:A.271, C:I.190, B:L.170 Hydrogen bonds: A:V.214, A:I.215 Salt bridges: A:R.276 pi-Cation interactions: A:R.268 Metal complexes: A:H.253 HEC.4: 23 residues within 4Å: Chain A: H.144, V.145, A.146, V.147, N.148, G.149, T.150, G.151, L.245, F.251, Q.267, T.270, A.271, A.274, V.278, V.307, G.308, C.309, C.312, H.313, Y.317, R.318, P.319 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:V.145, A:L.245, A:T.270, A:A.274, A:V.278, A:V.307, A:P.319 Hydrogen bonds: A:V.145, A:V.147, A:N.148, A:G.149, A:T.150, A:T.150, A:Q.267 Salt bridges: A:R.318, A:R.318 Metal complexes: A:H.144, A:H.313

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 2 residues within 4Å: Chain A: Q.185, E.232 No protein-ligand interaction detected (PLIP)

1 x DGA: DIACYL GLYCEROL(Covalent)

DGA.6: 8 residues within 4Å: Chain 2: Y.35 Chain A: C.23, E.24 Chain B: V.251, V.254, F.259 Ligands: PGV.8, PGV.9 3 PLIP interactions: 2 interactions with chain 2, 1 interactions with chain B Hydrophobic interactions: 2:Y.35, B:F.259 Hydrogen bonds: 2:Y.35

1 x PLM: PALMITIC ACID(Covalent)

PLM.7: 7 residues within 4Å: Chain A: C.23 Chain B: W.260, W.267, W.270 Ligands: PGV.9, PGV.14, PGV.92 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.270, B:W.270

12 x PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(Non-covalent)

PGV.8: 15 residues within 4Å: Chain 0: L.27, F.30, I.31, S.34 Chain 2: Y.35, L.38 Chain A: C.23, E.24, R.25, N.45, R.47, L.48 Chain B: R.262 Ligands: DGA.6, PGV.92 10 PLIP interactions: 5 interactions with chain 0, 3 interactions with chain A, 1 interactions with chain B, 1 interactions with chain 2 Hydrophobic interactions: 0:L.27, 0:L.27, 0:F.30, 0:I.31, 2:L.38 Hydrogen bonds: 0:S.34, A:R.25, A:N.45, B:R.262 Salt bridges: A:R.47 PGV.9: 10 residues within 4Å: Chain A: C.23 Chain B: P.176, W.248, I.255, F.259, W.260, W.264, W.267 Ligands: DGA.6, PLM.7 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:P.176, B:W.248 Hydrogen bonds: A:C.23 PGV.14: 7 residues within 4Å: Chain A: Y.194 Chain B: N.269, W.270, E.273 Chain Y: S.38 Ligands: PLM.7, PGV.92 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.270, B:E.273 Hydrogen bonds: B:N.269, A:Y.194, A:Y.194 PGV.15: 17 residues within 4Å: Chain B: I.49, Q.62, Y.64, I.66, I.69, Y.153, G.154, I.155 Chain E: L.27, I.31, S.34 Chain G: M.34, L.37, N.43, E.46 Ligands: BPH.11, PGV.40 9 PLIP interactions: 6 interactions with chain B, 2 interactions with chain E, 1 interactions with chain G Hydrophobic interactions: B:I.49, B:Y.64, B:Y.64, B:I.69, B:I.69, B:I.155, E:L.27, E:I.31 Hydrogen bonds: G:N.43 PGV.19: 14 residues within 4Å: Chain 8: R.12 Chain B: A.1, V.26, G.27, V.31, F.39 Chain D: S.43, D.44 Chain E: R.11, R.12, V.15, A.16 Ligands: CDL.32, CDL.41 12 PLIP interactions: 5 interactions with chain E, 2 interactions with chain D, 2 interactions with chain 8, 3 interactions with chain B Hydrophobic interactions: E:V.15, E:A.16, B:V.31, B:F.39 Hydrogen bonds: E:R.12, D:D.44, D:D.44, B:G.27 Salt bridges: E:R.11, E:R.12, 8:R.12, 8:R.12 PGV.27: 12 residues within 4Å: Chain B: V.225, G.226, Y.227 Chain C: G.31, R.32, I.34, I.42, I.47, G.48, I.50 Ligands: UQ8.12, CDL.73 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:Y.227, B:Y.227, C:I.34, C:I.42, C:I.47 Hydrogen bonds: C:R.32 PGV.29: 9 residues within 4Å: Chain C: L.127, W.129, Y.133 Chain O: R.11, V.15, G.19, F.20, V.23 Ligands: CDL.30 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain O Hydrophobic interactions: C:L.127, C:W.129, O:F.20, O:V.23 Salt bridges: O:R.11 PGV.31: 14 residues within 4Å: Chain B: N.65, W.67 Chain C: P.199, L.203, H.300, V.302 Chain D: Y.8, Q.13, W.17, W.20 Ligands: BCL.16, CDL.32, PGV.34, PGV.40 10 PLIP interactions: 5 interactions with chain C, 2 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: C:P.199, C:L.203, D:W.20, D:W.20, B:W.67, B:W.67 Hydrogen bonds: C:H.300, C:H.300, B:N.65 Salt bridges: C:H.300 PGV.34: 14 residues within 4Å: Chain D: Y.8, M.9, Q.13, L.14, W.17, F.21 Chain G: I.35 Chain I: M.34, I.35, L.37, S.38, E.46 Ligands: PGV.31, PGV.40 8 PLIP interactions: 5 interactions with chain D, 1 interactions with chain G, 2 interactions with chain I Hydrophobic interactions: D:W.17, D:F.21, G:I.35, I:M.34, I:I.35 Hydrogen bonds: D:Y.8, D:Y.8, D:Q.13 PGV.40: 11 residues within 4Å: Chain B: T.63, N.65, I.66 Chain G: I.27, L.30, M.34, I.35, S.38 Ligands: PGV.15, PGV.31, PGV.34 6 PLIP interactions: 3 interactions with chain G, 3 interactions with chain B Hydrophobic interactions: G:I.27, G:L.30, G:I.35, B:I.66 Hydrogen bonds: B:N.65, B:I.66 PGV.92: 10 residues within 4Å: Chain 0: S.34, N.39, L.41, S.42 Chain Y: M.34, I.35, S.38 Ligands: PLM.7, PGV.8, PGV.14 4 PLIP interactions: 2 interactions with chain 0, 2 interactions with chain Y Hydrogen bonds: 0:N.39, 0:S.42 Hydrophobic interactions: Y:M.34, Y:I.35 PGV.103: 13 residues within 4Å: Chain 2: F.32, S.39 Chain 4: F.30, L.33, S.34 Chain B: L.76, G.79, L.80, V.138, V.139, I.142, L.143 Ligands: UQ8.13 6 PLIP interactions: 3 interactions with chain 4, 1 interactions with chain 2, 2 interactions with chain B Hydrophobic interactions: 4:F.30, 4:L.33, 2:F.32, B:V.138, B:V.139 Hydrogen bonds: 4:S.34

36 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.10: 23 residues within 4Å: Chain B: F.102, F.126, A.129, L.136, V.162, V.165, F.172, H.173, H.178, A.181, I.182, F.185, S.249, A.250, C.252, I.253 Chain C: Y.196, Y.209 Ligands: BPH.11, BCL.16, BCL.17, BCL.22, MQ8.24 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:F.102, B:F.126, B:A.129, B:V.162, B:V.165, B:F.172, B:F.172, B:A.181, B:I.182, B:I.182, B:F.185, B:I.253 Hydrogen bonds: B:S.249 Metal complexes: B:H.178 BCL.16: 20 residues within 4Å: Chain B: V.46, Y.133, L.136, F.151, I.155, H.158, L.159 Chain C: Y.196, M.202, I.205, A.206, Y.209, G.210, L.213 Ligands: BCL.10, BPH.11, BCL.22, MQ8.24, PGV.31, CDL.32 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain C, Hydrophobic interactions: B:V.46, B:Y.133, B:L.136, B:F.151, B:L.159, C:Y.196, C:I.205, C:I.205, C:L.213 Metal complexes: B:H.158 pi-Stacking: C:Y.209 BCL.17: 17 residues within 4Å: Chain B: H.173, M.179, I.182, T.183, F.186, T.187, L.190 Chain C: Y.156, L.159, I.178, H.181, L.182, T.185 Ligands: BCL.10, BCL.22, BPH.23, CRT.25 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain B, Hydrophobic interactions: C:Y.156, C:L.159, C:I.178, C:L.182, B:I.182, B:I.182, B:T.187, B:L.190 Metal complexes: C:H.181 BCL.22: 23 residues within 4Å: Chain B: F.186 Chain C: I.67, L.121, F.155, L.159, T.185, F.188, S.189, L.195, Y.196, H.201, S.204, I.205, Y.209, T.275, V.276, A.279, I.283 Ligands: BCL.10, BCL.16, BCL.17, BPH.23, CRT.25 11 PLIP interactions: 11 interactions with chain C, Hydrophobic interactions: C:I.67, C:L.121, C:L.121, C:F.155, C:F.155, C:F.188, C:Y.196, C:Y.196, C:I.205 Hydrogen bonds: C:Y.196 Metal complexes: C:H.201 BCL.36: 17 residues within 4Å: Chain 8: I.28 Chain E: F.18, L.21, F.22, H.29, L.32, W.40 Chain F: F.28, I.31, V.32, A.35, H.36, W.42 Ligands: LMT.37, BCL.38, CRT.108, BCL.114 12 PLIP interactions: 7 interactions with chain E, 4 interactions with chain F, 1 interactions with chain 8, Hydrophobic interactions: E:F.18, E:L.21, E:L.32, E:W.40, E:W.40, E:W.40, F:F.28, F:F.28, F:W.42, 8:I.28 Metal complexes: E:H.29 Hydrogen bonds: F:H.36 BCL.38: 16 residues within 4Å: Chain E: L.21, L.24, G.25, I.28, H.29, L.32 Chain F: F.28, F.29, V.32, H.36, W.40, W.45 Ligands: BCL.36, CRT.39, BCL.42, LMT.44 14 PLIP interactions: 11 interactions with chain F, 3 interactions with chain E, Hydrophobic interactions: F:F.28, F:F.29, F:V.32, F:H.36, F:W.40, F:W.40, F:W.45, F:W.45, F:W.45, E:I.28, E:I.28, E:L.32 pi-Stacking: F:W.45 Metal complexes: F:H.36 BCL.42: 16 residues within 4Å: Chain G: F.22, L.25, T.26, H.33, W.44 Chain H: F.29, I.32, V.33, A.36, H.37, W.43 Ligands: BCL.38, CRT.39, CDL.41, LMT.44, BCL.45 11 PLIP interactions: 8 interactions with chain G, 3 interactions with chain H, Hydrophobic interactions: G:F.22, G:L.25, G:L.25, G:W.44, G:W.44, G:W.44, G:W.44, H:F.29, H:W.43 Metal complexes: G:H.33 Hydrogen bonds: H:H.37 BCL.45: 15 residues within 4Å: Chain G: L.25, L.28, G.29, I.32, H.33, L.36 Chain H: F.30, V.33, I.34, H.37, W.41, W.46 Ligands: BCL.42, BCL.47, LMT.49 8 PLIP interactions: 1 interactions with chain G, 7 interactions with chain H, Hydrophobic interactions: G:I.32, H:V.33, H:I.34, H:H.37, H:W.41, H:W.41, H:W.46 Metal complexes: H:H.37 BCL.47: 16 residues within 4Å: Chain G: I.32 Chain I: F.22, L.25, T.26, H.33, L.36, W.44 Chain J: F.29, V.33, A.36, H.37 Ligands: BCL.45, CRT.46, LMT.49, BCL.50, CRT.51 12 PLIP interactions: 9 interactions with chain I, 2 interactions with chain J, 1 interactions with chain G, Hydrophobic interactions: I:F.22, I:F.22, I:L.25, I:L.36, I:W.44, I:W.44, I:W.44, J:F.29, G:I.32 pi-Stacking: I:H.33 Metal complexes: I:H.33 Hydrogen bonds: J:H.37 BCL.50: 17 residues within 4Å: Chain I: L.25, L.28, G.29, I.32, H.33, L.36, F.42 Chain J: F.30, V.33, H.37, W.41, W.46, L.47 Ligands: BCL.47, CRT.51, BCL.53, LMT.54 10 PLIP interactions: 8 interactions with chain J, 2 interactions with chain I, Hydrophobic interactions: J:W.41, J:W.41, J:W.46, J:W.46, J:W.46, J:L.47, I:I.32, I:F.42 pi-Stacking: J:W.46 Metal complexes: J:H.37 BCL.53: 14 residues within 4Å: Chain I: I.32 Chain K: F.18, L.21, H.29, L.32, W.40 Chain L: F.28, I.31, A.35, H.36 Ligands: BCL.50, CRT.51, LMT.54, BCL.55 10 PLIP interactions: 1 interactions with chain L, 8 interactions with chain K, 1 interactions with chain I, Hydrogen bonds: L:H.36 Hydrophobic interactions: K:F.18, K:F.18, K:L.21, K:L.32, K:W.40, K:W.40, I:I.32 pi-Stacking: K:H.29 Metal complexes: K:H.29 BCL.55: 17 residues within 4Å: Chain K: L.21, L.24, G.25, I.28, H.29, L.32, F.38 Chain L: F.28, F.29, V.32, H.36, W.45, L.46 Ligands: BCL.53, CRT.56, LMT.57, BCL.60 11 PLIP interactions: 7 interactions with chain L, 4 interactions with chain K, Hydrophobic interactions: L:F.28, L:V.32, L:W.45, L:W.45, L:L.46, K:I.28, K:I.28, K:L.32, K:F.38 pi-Stacking: L:W.45 Metal complexes: L:H.36 BCL.60: 14 residues within 4Å: Chain K: I.28 Chain L: F.29 Chain M: F.18, H.29, L.32, W.40 Chain N: I.31, V.32, A.35, H.36 Ligands: BCL.55, CRT.56, LMT.57, BCL.61 8 PLIP interactions: 1 interactions with chain L, 4 interactions with chain M, 2 interactions with chain N, 1 interactions with chain K, Hydrophobic interactions: L:F.29, M:L.32, M:W.40, M:W.40, N:A.35, K:I.28 Metal complexes: M:H.29 Hydrogen bonds: N:H.36 BCL.61: 17 residues within 4Å: Chain M: L.21, L.24, G.25, I.28, H.29, L.32 Chain N: F.28, F.29, V.32, V.33, H.36, A.39, W.45 Chain P: L.38 Ligands: BCL.60, LMT.63, BCL.65 10 PLIP interactions: 1 interactions with chain M, 8 interactions with chain N, 1 interactions with chain P, Hydrophobic interactions: M:I.28, N:F.28, N:V.32, N:V.33, N:H.36, N:A.39, N:W.45, N:W.45, P:L.38 Metal complexes: N:H.36 BCL.65: 15 residues within 4Å: Chain N: F.29 Chain O: L.21, F.22, G.25, H.29, W.40 Chain P: F.28, V.32, A.35, H.36, W.42 Ligands: BCL.61, CRT.62, LMT.63, BCL.66 10 PLIP interactions: 5 interactions with chain O, 1 interactions with chain N, 4 interactions with chain P, Hydrophobic interactions: O:L.21, O:W.40, O:W.40, N:F.29, P:F.28, P:A.35, P:W.42 Hydrogen bonds: O:G.25, P:H.36 Metal complexes: O:H.29 BCL.66: 18 residues within 4Å: Chain O: L.21, L.24, G.25, I.28, H.29, L.32 Chain P: F.28, F.29, V.32, H.36, I.37, A.39, W.40, W.45 Ligands: BCL.65, CRT.67, LMT.68, BCL.69 10 PLIP interactions: 9 interactions with chain P, 1 interactions with chain O, Hydrophobic interactions: P:V.32, P:H.36, P:I.37, P:A.39, P:W.40, P:W.40, P:W.45, P:W.45, O:I.28 Metal complexes: P:H.36 BCL.69: 15 residues within 4Å: Chain O: I.28 Chain Q: L.21, F.22, H.29, W.40 Chain R: F.28, I.31, V.32, A.35, H.36, W.42 Ligands: BCL.66, CRT.67, LMT.68, BCL.71 8 PLIP interactions: 5 interactions with chain Q, 2 interactions with chain R, 1 interactions with chain O, Hydrophobic interactions: Q:L.21, Q:W.40, Q:W.40, R:W.42, O:I.28 pi-Stacking: Q:H.29 Metal complexes: Q:H.29 Hydrogen bonds: R:H.36 BCL.71: 17 residues within 4Å: Chain Q: L.21, L.24, G.25, I.28, H.29, L.32 Chain R: F.28, F.29, V.32, V.33, H.36, I.37, W.40, W.45 Ligands: BCL.69, CRT.72, BCL.74 10 PLIP interactions: 9 interactions with chain R, 1 interactions with chain Q, Hydrophobic interactions: R:F.28, R:F.29, R:V.32, R:V.33, R:I.37, R:W.40, R:W.45, R:W.45, Q:I.28 Metal complexes: R:H.36 BCL.74: 17 residues within 4Å: Chain Q: I.28 Chain S: F.22, L.25, H.33, W.44 Chain T: F.29, I.32, V.33, A.36, H.37, A.40, W.43 Ligands: BCL.71, CRT.72, CDL.73, LMT.77, BCL.78 10 PLIP interactions: 7 interactions with chain S, 1 interactions with chain Q, 2 interactions with chain T, Hydrophobic interactions: S:F.22, S:L.25, S:W.44, S:W.44, S:W.44, S:W.44, Q:I.28, T:A.40, T:W.43 Metal complexes: S:H.33 BCL.78: 16 residues within 4Å: Chain S: L.25, L.28, G.29, I.32, H.33, F.42 Chain T: F.30, V.33, I.34, H.37, W.41, W.46, L.47 Ligands: BCL.74, BCL.79, LMT.81 13 PLIP interactions: 10 interactions with chain T, 3 interactions with chain S, Hydrophobic interactions: T:V.33, T:V.33, T:I.34, T:W.41, T:W.41, T:W.46, T:W.46, T:L.47, T:L.47, S:I.32, S:I.32, S:F.42 Metal complexes: T:H.37 BCL.79: 17 residues within 4Å: Chain S: I.32 Chain T: M.26, F.30 Chain U: F.22, L.25, T.26, H.33, W.44 Chain V: F.29, I.32, A.36, H.37, W.43 Ligands: CRT.70, BCL.78, LMT.81, BCL.82 11 PLIP interactions: 7 interactions with chain U, 1 interactions with chain S, 2 interactions with chain V, 1 interactions with chain T, Hydrophobic interactions: U:F.22, U:F.22, U:W.44, U:W.44, U:W.44, S:I.32, V:F.29, V:W.43, T:F.30 pi-Stacking: U:H.33 Metal complexes: U:H.33 BCL.82: 17 residues within 4Å: Chain U: L.25, L.28, G.29, I.32, H.33, L.36 Chain V: F.29, F.30, V.33, I.34, H.37, I.38, W.41, W.46 Ligands: BCL.79, BCL.83, LMT.85 8 PLIP interactions: 1 interactions with chain U, 7 interactions with chain V, Hydrophobic interactions: U:I.32, V:I.34, V:H.37, V:I.38, V:W.41, V:W.46, V:W.46 Metal complexes: V:H.37 BCL.83: 17 residues within 4Å: Chain U: I.32 Chain W: F.22, L.25, T.26, H.33, L.36, W.44 Chain X: M.28, F.29, V.33, A.36, H.37, W.43 Ligands: CRT.76, BCL.82, LMT.85, BCL.86 10 PLIP interactions: 7 interactions with chain W, 1 interactions with chain U, 2 interactions with chain X, Hydrophobic interactions: W:F.22, W:L.25, W:L.25, W:L.36, W:W.44, W:W.44, U:I.32, X:F.29, X:W.43 Metal complexes: W:H.33 BCL.86: 14 residues within 4Å: Chain W: L.25, L.28, G.29, I.32, H.33, L.36 Chain X: F.29, F.30, V.33, H.37, W.46 Ligands: BCL.83, CRT.87, BCL.88 10 PLIP interactions: 7 interactions with chain X, 3 interactions with chain W, Hydrophobic interactions: X:V.33, X:V.33, X:H.37, X:W.46, X:W.46, X:W.46, W:I.32, W:I.32, W:L.36 Metal complexes: X:H.37 BCL.88: 19 residues within 4Å: Chain W: M.1, I.32 Chain Y: F.22, L.25, T.26, H.33, L.36, W.44 Chain Z: M.28, F.29, I.32, V.33, A.36, H.37, W.43 Ligands: BCL.86, CRT.87, LMT.90, BCL.91 13 PLIP interactions: 9 interactions with chain Y, 3 interactions with chain Z, 1 interactions with chain W, Hydrophobic interactions: Y:F.22, Y:F.22, Y:L.25, Y:L.36, Y:W.44, Y:W.44, Y:W.44, Z:F.29, Z:I.32, Z:W.43, W:I.32 pi-Stacking: Y:H.33 Metal complexes: Y:H.33 BCL.91: 17 residues within 4Å: Chain Y: L.25, L.28, G.29, I.32, H.33, L.36 Chain Z: F.29, F.30, V.33, I.34, H.37, W.41, W.46 Ligands: BCL.88, CRT.93, BCL.94, LMT.95 13 PLIP interactions: 10 interactions with chain Z, 3 interactions with chain Y, Hydrophobic interactions: Z:F.30, Z:H.37, Z:W.41, Z:W.41, Z:W.46, Z:W.46, Z:W.46, Z:W.46, Z:W.46, Y:I.32, Y:I.32, Y:L.36 Metal complexes: Z:H.37 BCL.94: 18 residues within 4Å: Chain 0: F.18, L.21, H.29, L.32, W.40 Chain 1: F.28, I.31, V.32, A.35, H.36, W.42 Chain Y: I.32 Chain Z: F.22, M.26 Ligands: BCL.91, CRT.93, LMT.95, BCL.96 12 PLIP interactions: 7 interactions with chain 0, 3 interactions with chain 1, 1 interactions with chain Y, 1 interactions with chain Z, Hydrophobic interactions: 0:L.21, 0:L.32, 0:W.40, 0:W.40, 0:W.40, 0:W.40, 1:F.28, 1:F.28, 1:W.42, Y:I.32, Z:F.22 Metal complexes: 0:H.29 BCL.96: 16 residues within 4Å: Chain 0: L.21, L.24, G.25, I.28, H.29, L.32 Chain 1: F.29, V.32, H.36, W.40, W.45, L.46 Ligands: BCL.94, CRT.97, BCL.98, LMT.99 11 PLIP interactions: 8 interactions with chain 1, 3 interactions with chain 0, Hydrophobic interactions: 1:V.32, 1:W.40, 1:W.40, 1:W.45, 1:W.45, 1:W.45, 1:L.46, 0:I.28, 0:I.28, 0:L.32 Metal complexes: 1:H.36 BCL.98: 17 residues within 4Å: Chain 1: F.29 Chain 2: L.26, F.27, A.30, H.34, L.37, W.45 Chain 3: F.28, I.31, V.32, A.35, H.36, W.42 Ligands: BCL.96, CRT.97, LMT.99, BCL.100 13 PLIP interactions: 8 interactions with chain 2, 4 interactions with chain 3, 1 interactions with chain 1, Hydrophobic interactions: 2:L.26, 2:A.30, 2:L.37, 2:W.45, 2:W.45, 2:W.45, 2:W.45, 3:F.28, 3:F.28, 3:A.35, 3:W.42, 1:F.29 Metal complexes: 2:H.34 BCL.100: 15 residues within 4Å: Chain 2: L.26, L.29, A.30, I.33, H.34 Chain 3: F.28, F.29, V.32, H.36, W.40, W.45 Ligands: BCL.98, CRT.101, LMT.102, BCL.104 9 PLIP interactions: 8 interactions with chain 3, 1 interactions with chain 2, Hydrophobic interactions: 3:F.29, 3:W.40, 3:W.45, 3:W.45, 3:W.45, 3:W.45, 3:W.45, 2:I.33 Metal complexes: 3:H.36 BCL.104: 13 residues within 4Å: Chain 2: I.33 Chain 3: M.25, F.29 Chain 4: H.29, L.32, W.40 Chain 5: V.32, A.35, H.36 Ligands: BCL.100, CRT.101, LMT.102, BCL.105 6 PLIP interactions: 4 interactions with chain 4, 1 interactions with chain 5, 1 interactions with chain 2, Hydrophobic interactions: 4:L.32, 4:W.40, 4:W.40, 5:A.35, 2:I.33 Metal complexes: 4:H.29 BCL.105: 14 residues within 4Å: Chain 4: L.21, L.24, G.25, I.28, H.29, L.32 Chain 5: F.29, V.32, H.36, A.39, W.45 Ligands: BCL.104, BCL.107, LMT.109 9 PLIP interactions: 6 interactions with chain 5, 3 interactions with chain 4, Hydrophobic interactions: 5:H.36, 5:A.39, 5:W.45, 5:W.45, 5:W.45, 4:I.28, 4:I.28, 4:L.32 Metal complexes: 5:H.36 BCL.107: 15 residues within 4Å: Chain 4: I.28 Chain 6: F.18, L.21, H.29, W.40 Chain 7: F.28, I.31, A.35, H.36, W.42 Ligands: UQ8.13, BCL.105, CRT.106, LMT.109, BCL.110 8 PLIP interactions: 1 interactions with chain 4, 6 interactions with chain 6, 1 interactions with chain 7, Hydrophobic interactions: 4:I.28, 6:F.18, 6:L.21, 6:W.40, 6:W.40, 6:W.40, 7:W.42 Metal complexes: 6:H.29 BCL.110: 17 residues within 4Å: Chain 6: L.21, L.24, G.25, I.28, H.29, L.32 Chain 7: F.28, F.29, V.32, H.36, I.37, A.39, W.40, W.45 Ligands: BCL.107, BCL.112, LMT.113 11 PLIP interactions: 9 interactions with chain 7, 2 interactions with chain 6, Hydrophobic interactions: 7:F.28, 7:F.29, 7:V.32, 7:I.37, 7:A.39, 7:W.40, 7:W.45, 7:W.45, 6:I.28, 6:L.32 Metal complexes: 7:H.36 BCL.112: 18 residues within 4Å: Chain 6: I.28 Chain 7: F.29 Chain 8: F.18, L.21, F.22, H.29, W.40 Chain 9: F.28, I.31, V.32, A.35, H.36, W.42 Ligands: UQ8.20, BCL.110, CRT.111, LMT.113, BCL.114 8 PLIP interactions: 1 interactions with chain 6, 4 interactions with chain 8, 3 interactions with chain 9, Hydrophobic interactions: 6:I.28, 8:W.40, 8:W.40, 8:W.40, 9:F.28, 9:A.35, 9:W.42 Metal complexes: 8:H.29 BCL.114: 16 residues within 4Å: Chain 8: L.21, L.24, G.25, I.28, H.29, L.32, F.38 Chain 9: F.29, V.32, H.36, W.40, W.45, L.46 Ligands: BCL.36, LMT.37, BCL.112 13 PLIP interactions: 9 interactions with chain 9, 4 interactions with chain 8, Hydrophobic interactions: 9:F.29, 9:V.32, 9:W.40, 9:W.45, 9:W.45, 9:W.45, 9:W.45, 9:L.46, 8:I.28, 8:I.28, 8:L.32, 8:F.38 Metal complexes: 9:H.36

2 x BPH: BACTERIOPHEOPHYTIN A(Non-covalent)

BPH.11: 24 residues within 4Å: Chain B: A.42, G.45, A.98, F.102, W.105, E.109, I.122, A.125, F.126, A.129, Y.133, Y.153, H.158, V.246 Chain C: Y.209, A.212, L.213, M.217, W.251, M.255 Ligands: BCL.10, PGV.15, BCL.16, MQ8.24 14 PLIP interactions: 3 interactions with chain C, 11 interactions with chain B Hydrophobic interactions: C:Y.209, C:A.212, C:L.213, B:A.42, B:A.98, B:A.125, B:F.126, B:A.129, B:Y.133, B:Y.153, B:Y.153, B:V.246 Hydrogen bonds: B:E.109 pi-Stacking: B:F.126 BPH.23: 18 residues within 4Å: Chain B: F.186, C.189, L.190, S.193, M.194 Chain C: I.60, G.63, F.64, I.67, S.124, W.128, L.145, A.148, F.149, A.272, V.276 Ligands: BCL.17, BCL.22 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:I.60, C:F.64, C:I.67, C:A.148, C:F.149, C:V.276, B:F.186, B:L.190 pi-Stacking: C:F.149

3 x UQ8: Ubiquinone-8(Non-covalent)

UQ8.12: 18 residues within 4Å: Chain B: T.183, F.184, T.187, A.191, M.194, H.195, L.198, E.217, N.218, F.221, Y.227, S.228, I.229, G.230, A.231, I.234, L.237 Ligands: PGV.27 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:T.183, B:F.184, B:T.187, B:A.191, B:M.194, B:F.221, B:F.221, B:I.229, B:I.234, B:L.237 Hydrogen bonds: B:I.229, B:G.230 UQ8.13: 21 residues within 4Å: Chain 4: W.5, L.17, F.20, L.27, F.30 Chain 5: F.21 Chain 6: F.22, F.30 Chain B: F.33, F.34, F.41, L.80, Q.92, I.96, I.99, G.100, S.104, W.147 Ligands: PGV.103, CRT.106, BCL.107 15 PLIP interactions: 1 interactions with chain 5, 5 interactions with chain 4, 1 interactions with chain 6, 8 interactions with chain B Hydrophobic interactions: 5:F.21, 4:W.5, 4:F.20, 4:F.20, 4:L.27, 4:F.30, 6:F.22, B:F.33, B:F.34, B:F.41, B:F.41, B:I.96, B:I.99, B:I.99 pi-Stacking: B:W.147 UQ8.20: 9 residues within 4Å: Chain 6: F.20, V.23, L.27 Chain 8: G.19, F.22 Chain B: F.40, F.41, L.44 Ligands: BCL.112 7 PLIP interactions: 1 interactions with chain B, 3 interactions with chain 6, 3 interactions with chain 8 Hydrophobic interactions: B:F.40, 6:F.20, 6:F.20, 6:V.23, 8:F.22, 8:F.22, 8:F.22

8 x CDL: CARDIOLIPIN(Non-covalent)

CDL.18: 15 residues within 4Å: Chain B: A.106, R.114, F.120, F.124, A.127, F.128, I.130, G.131, L.239, W.248 Chain C: P.1, E.2, Q.4, I.6 Chain D: L.258 11 PLIP interactions: 3 interactions with chain C, 8 interactions with chain B Hydrophobic interactions: C:I.6, B:A.106, B:F.120, B:F.124, B:A.127, B:F.128, B:F.128, B:L.239 Hydrogen bonds: C:E.2, C:Q.4 Salt bridges: B:R.114 CDL.28: 10 residues within 4Å: Chain C: Y.3, Q.4, N.5, I.6, F.7, A.9, W.38, K.41 Chain D: R.201, K.204 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:W.38 Hydrogen bonds: C:Q.4, C:N.5, C:I.6, C:F.7, C:A.9, D:R.201 Salt bridges: C:K.41, D:R.201, D:R.201, D:K.204 CDL.30: 24 residues within 4Å: Chain B: N.204, P.205 Chain C: W.129, S.142, H.144, W.147, A.150, A.151, I.153, F.154, R.266, W.269, W.270, I.277 Chain D: A.18, F.19, F.21, F.22, G.25, L.26, Y.29 Ligands: PGV.29, CDL.52, LMT.59 16 PLIP interactions: 13 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:W.129, C:A.150, C:A.151, C:F.154, C:F.154, C:F.154, C:W.269, C:W.270, C:I.277, C:I.277, D:F.22, D:F.22, D:Y.29 Hydrogen bonds: C:S.142 Salt bridges: C:H.144, C:R.266 CDL.32: 24 residues within 4Å: Chain B: F.29, V.31, G.35, F.39 Chain C: G.256, F.257, W.267, W.270, C.271 Chain D: I.27, R.31, K.35, Y.39, L.41, V.55, V.56, G.57, F.58 Chain E: R.12 Ligands: BCL.16, PGV.19, MQ8.24, PGV.31, CDL.41 15 PLIP interactions: 3 interactions with chain B, 6 interactions with chain D, 1 interactions with chain E, 5 interactions with chain C Hydrophobic interactions: B:F.29, B:F.29, B:F.39, D:I.27, C:F.257, C:F.257, C:W.267, C:W.270 Hydrogen bonds: D:V.56, D:F.58, C:R.252 Salt bridges: D:R.31, D:R.31, D:K.35, E:R.12 CDL.33: 12 residues within 4Å: Chain D: R.32, F.58, D.60 Chain G: D.13, R.16, V.17, A.20 Chain I: R.15, R.16, I.19, F.22 Ligands: CDL.41 9 PLIP interactions: 6 interactions with chain I, 2 interactions with chain D, 1 interactions with chain G Hydrophobic interactions: I:F.22, I:F.22, D:F.58 Hydrogen bonds: I:R.16, I:R.16 Salt bridges: I:R.15, I:R.16, D:R.32, G:R.16 CDL.41: 18 residues within 4Å: Chain D: R.45, V.55, V.56, G.57, F.58 Chain E: F.8, D.9, R.12, T.13 Chain G: R.15, R.16, I.19, A.23, T.26 Ligands: PGV.19, CDL.32, CDL.33, BCL.42 10 PLIP interactions: 1 interactions with chain E, 5 interactions with chain D, 4 interactions with chain G Hydrogen bonds: E:D.9, D:K.54, D:V.56, D:G.57 Hydrophobic interactions: D:F.58 Salt bridges: D:R.45, G:R.15, G:R.15, G:R.16, G:R.16 CDL.52: 7 residues within 4Å: Chain D: Y.29 Chain I: D.13, R.16 Chain K: R.11, R.12, V.15 Ligands: CDL.30 3 PLIP interactions: 3 interactions with chain K Salt bridges: K:R.11, K:R.11, K:R.12 CDL.73: 15 residues within 4Å: Chain C: I.30, G.31, F.64 Chain Q: I.4, W.5, D.9, R.12, A.16, F.20 Chain R: F.21 Chain S: R.15, I.19, F.22 Ligands: PGV.27, BCL.74 9 PLIP interactions: 2 interactions with chain C, 2 interactions with chain S, 4 interactions with chain Q, 1 interactions with chain R Hydrophobic interactions: C:F.64, S:F.22, Q:I.4, Q:W.5, Q:F.20, R:F.21 Hydrogen bonds: C:G.31, Q:D.9 Salt bridges: S:R.15

1 x FE: FE (III) ION(Non-covalent)

FE.21: 5 residues within 4Å: Chain B: H.195, H.235 Chain C: H.218, E.233, H.265 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Metal complexes: C:H.218, C:E.233, C:H.265, B:H.195, B:H.235

2 x MQ8: MENAQUINONE 8(Non-covalent)

MQ8.24: 19 residues within 4Å: Chain B: F.29, A.42, V.46 Chain C: M.217, H.218, T.221, A.247, W.251, M.255, N.258, A.259, S.260, M.261, I.264, W.267 Ligands: BCL.10, BPH.11, BCL.16, CDL.32 11 PLIP interactions: 7 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: C:M.217, C:T.221, C:A.247, C:W.251, C:A.259, C:W.267, B:F.29, B:A.42, B:V.46, B:V.46 Hydrogen bonds: C:A.259 MQ8.26: 10 residues within 4Å: Chain B: W.268, W.271 Chain C: F.85, V.86, F.89, F.90 Chain U: F.24, I.27 Chain W: L.30, M.34 12 PLIP interactions: 3 interactions with chain B, 5 interactions with chain C, 3 interactions with chain U, 1 interactions with chain W Hydrophobic interactions: B:W.268, C:F.85, C:F.89, C:F.90, C:F.90, U:F.24, U:I.27, U:I.27, W:L.30 pi-Stacking: B:W.271, B:W.271 Water bridges: C:F.90

17 x CRT: SPIRILLOXANTHIN(Non-covalent)

CRT.25: 23 residues within 4Å: Chain C: I.67, F.68, I.70, G.71, M.74, F.89, L.115, G.118, F.119, T.122, Y.156, G.160, F.161, W.170, V.174, P.175, F.176, G.177, H.181 Chain O: L.27 Chain Q: F.30 Ligands: BCL.17, BCL.22 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain O Hydrophobic interactions: C:I.67, C:F.68, C:I.70, C:F.89, C:L.115, C:F.119, C:Y.156, C:F.161, C:W.170, C:V.174, C:V.174, C:F.176, O:L.27 CRT.39: 19 residues within 4Å: Chain 8: K.3, I.4, I.7 Chain E: L.17, F.18, F.20, L.21, L.24, L.27 Chain F: E.13, F.17, I.20, F.21, S.24 Chain G: L.30, H.33, M.34 Ligands: BCL.38, BCL.42 17 PLIP interactions: 7 interactions with chain E, 3 interactions with chain 8, 7 interactions with chain F Hydrophobic interactions: E:L.17, E:F.18, E:F.20, E:F.20, E:L.21, E:L.24, E:L.27, 8:K.3, 8:I.4, 8:I.7, F:F.17, F:F.17, F:F.17, F:I.20, F:I.20, F:F.21, F:F.21 CRT.46: 17 residues within 4Å: Chain E: M.1, K.3, I.4, Q.6, I.7 Chain G: F.24, L.25 Chain H: E.17, F.18, I.21, F.22, S.25, M.26 Chain I: L.30, H.33, M.34 Ligands: BCL.47 12 PLIP interactions: 2 interactions with chain E, 3 interactions with chain G, 6 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: E:I.4, E:I.7, G:F.24, G:L.25, G:L.25, H:F.18, H:F.18, H:I.21, H:F.22, H:F.22, H:M.26, I:H.33 CRT.51: 20 residues within 4Å: Chain G: L.5, K.7, I.8, L.11 Chain I: F.24, L.25 Chain J: E.14, F.18, I.21, F.22, S.25, M.26, F.30 Chain K: F.22, L.26, H.29, F.30 Ligands: BCL.47, BCL.50, BCL.53 18 PLIP interactions: 3 interactions with chain I, 7 interactions with chain J, 5 interactions with chain G, 3 interactions with chain K Hydrophobic interactions: I:F.24, I:F.24, I:L.25, J:F.18, J:I.21, J:I.21, J:F.22, J:F.22, J:F.22, J:F.30, G:L.5, G:K.7, G:I.8, G:L.11, G:L.11, K:F.22, K:L.26, K:H.29 CRT.56: 21 residues within 4Å: Chain I: L.5, K.7, I.8, L.11 Chain K: L.14, L.17, F.20, L.21, L.24 Chain L: E.16, F.17, I.20, F.21, S.24, M.25 Chain M: F.22, L.26, H.29, F.30 Ligands: BCL.55, BCL.60 20 PLIP interactions: 7 interactions with chain L, 3 interactions with chain M, 3 interactions with chain I, 7 interactions with chain K Hydrophobic interactions: L:E.16, L:F.17, L:F.17, L:I.20, L:F.21, L:F.21, L:M.25, M:F.22, M:L.26, M:H.29, I:L.5, I:K.7, I:I.8, K:L.14, K:L.17, K:L.17, K:F.20, K:L.21, K:L.21, K:L.24 CRT.62: 16 residues within 4Å: Chain K: K.3, I.4, I.7 Chain M: L.14, L.17, F.18, L.21 Chain N: E.13, F.17, I.20, F.21, S.24, M.25 Chain O: F.22, H.29 Ligands: BCL.65 13 PLIP interactions: 5 interactions with chain M, 4 interactions with chain N, 3 interactions with chain K, 1 interactions with chain O Hydrophobic interactions: M:L.14, M:L.17, M:L.17, M:F.18, M:L.21, N:F.17, N:I.20, N:F.21, N:F.21, K:K.3, K:I.4, K:I.7, O:F.22 CRT.67: 20 residues within 4Å: Chain M: K.3, I.4, I.7 Chain O: L.14, L.17, F.20, L.24 Chain P: E.13, E.16, F.17, I.20, F.21, S.24, M.25 Chain Q: F.22, L.26, H.29, F.30 Ligands: BCL.66, BCL.69 14 PLIP interactions: 1 interactions with chain M, 4 interactions with chain O, 6 interactions with chain P, 3 interactions with chain Q Hydrophobic interactions: M:K.3, O:L.14, O:L.17, O:F.20, O:F.20, P:F.17, P:F.17, P:I.20, P:I.20, P:F.21, P:F.21, Q:F.22, Q:L.26, Q:H.29 CRT.70: 15 residues within 4Å: Chain Q: K.3, I.4, I.7 Chain S: F.24, L.25 Chain T: E.14, F.18, I.21, F.22, S.25, M.26 Chain U: L.30, H.33, M.34 Ligands: BCL.79 15 PLIP interactions: 1 interactions with chain U, 3 interactions with chain Q, 3 interactions with chain S, 8 interactions with chain T Hydrophobic interactions: U:H.33, Q:K.3, Q:I.4, Q:I.7, S:F.24, S:L.25, S:L.25, T:F.18, T:F.18, T:I.21, T:I.21, T:F.22, T:F.22, T:F.22, T:M.26 CRT.72: 18 residues within 4Å: Chain O: K.3, I.4, Q.6, I.7 Chain Q: L.17, F.20, L.24, I.28 Chain R: F.17, I.20, F.21, S.24, M.25, F.29 Chain S: L.30, H.33 Ligands: BCL.71, BCL.74 17 PLIP interactions: 4 interactions with chain Q, 8 interactions with chain R, 1 interactions with chain S, 4 interactions with chain O Hydrophobic interactions: Q:L.17, Q:F.20, Q:L.24, Q:I.28, R:F.17, R:I.20, R:I.20, R:F.21, R:F.21, R:F.21, R:F.29, R:F.29, S:H.33, O:K.3, O:K.3, O:I.4, O:I.7 CRT.76: 18 residues within 4Å: Chain S: K.7, I.8, L.11 Chain U: L.18, F.22, F.24, L.25, L.28 Chain V: E.14, E.17, F.18, I.21, S.25, M.26 Chain W: L.30, H.33, L.37 Ligands: BCL.83 16 PLIP interactions: 5 interactions with chain U, 2 interactions with chain S, 5 interactions with chain V, 4 interactions with chain W Hydrophobic interactions: U:F.22, U:F.24, U:L.25, U:L.25, U:L.28, S:K.7, S:I.8, V:E.17, V:F.18, V:F.18, V:F.18, V:I.21, W:L.30, W:L.30, W:H.33, W:L.37 CRT.87: 20 residues within 4Å: Chain U: K.7, I.8, L.10, L.11 Chain W: F.22, F.24, L.25, I.32 Chain X: E.17, F.18, I.21, F.22, S.25, M.26, F.30 Chain Y: L.30, H.33, M.34 Ligands: BCL.86, BCL.88 15 PLIP interactions: 3 interactions with chain U, 8 interactions with chain X, 4 interactions with chain W Hydrophobic interactions: U:K.7, U:I.8, U:L.11, X:F.18, X:F.18, X:I.21, X:I.21, X:F.22, X:F.22, X:M.26, X:F.30, W:F.22, W:F.24, W:L.25, W:I.32 CRT.93: 21 residues within 4Å: Chain 0: F.22, L.26, H.29, F.30 Chain W: K.7, I.8, L.11 Chain Y: L.18, V.21, F.22, L.25, L.28, I.35 Chain Z: E.14, F.18, I.21, F.22, S.25, M.26 Ligands: BCL.91, BCL.94 18 PLIP interactions: 3 interactions with chain W, 3 interactions with chain 0, 6 interactions with chain Y, 6 interactions with chain Z Hydrophobic interactions: W:K.7, W:I.8, W:L.11, 0:F.22, 0:F.22, 0:F.30, Y:L.18, Y:V.21, Y:F.22, Y:F.22, Y:L.25, Y:L.28, Z:F.18, Z:F.18, Z:I.21, Z:I.21, Z:F.22, Z:F.22 CRT.97: 19 residues within 4Å: Chain 0: L.17, F.20, L.24, L.27 Chain 1: E.13, F.17, I.20, F.21, S.24, M.25, F.29 Chain 2: F.27, L.31, H.34 Chain Y: K.7, I.8, L.11 Ligands: BCL.96, BCL.98 14 PLIP interactions: 2 interactions with chain Y, 3 interactions with chain 0, 8 interactions with chain 1, 1 interactions with chain 2 Hydrophobic interactions: Y:K.7, Y:I.8, 0:L.17, 0:F.20, 0:F.20, 1:F.17, 1:F.17, 1:I.20, 1:I.20, 1:F.21, 1:F.21, 1:M.25, 1:F.29, 2:F.27 CRT.101: 21 residues within 4Å: Chain 0: K.3, I.4, I.7 Chain 2: L.19, L.22, L.29, F.32, M.36 Chain 3: E.16, F.17, I.20, F.21, S.24, M.25, F.29 Chain 4: F.22, L.26, H.29, L.33 Ligands: BCL.100, BCL.104 13 PLIP interactions: 5 interactions with chain 3, 1 interactions with chain 0, 3 interactions with chain 4, 4 interactions with chain 2 Hydrophobic interactions: 3:F.17, 3:I.20, 3:F.21, 3:F.21, 3:F.29, 0:I.4, 4:F.22, 4:L.26, 4:L.33, 2:L.19, 2:L.22, 2:L.29, 2:F.32 CRT.106: 23 residues within 4Å: Chain 2: L.6, K.8, I.9 Chain 4: L.14, L.17, F.20, L.21, L.24, L.27, I.28, I.31 Chain 5: F.17, I.20, F.21, S.24, M.25, F.28 Chain 6: F.22, L.26, H.29, F.30 Ligands: UQ8.13, BCL.107 15 PLIP interactions: 2 interactions with chain 6, 2 interactions with chain 2, 6 interactions with chain 4, 5 interactions with chain 5 Hydrophobic interactions: 6:F.22, 6:L.26, 2:L.6, 2:I.9, 4:L.14, 4:L.17, 4:F.20, 4:L.21, 4:L.24, 4:I.28, 5:F.17, 5:I.20, 5:F.21, 5:F.21, 5:F.28 CRT.108: 16 residues within 4Å: Chain 6: K.3, I.4 Chain 8: F.18, L.21, L.24 Chain 9: E.16, F.17, I.20, F.21, S.24, M.25 Chain E: F.22, L.26, H.29, F.30 Ligands: BCL.36 14 PLIP interactions: 2 interactions with chain 6, 6 interactions with chain 9, 3 interactions with chain 8, 3 interactions with chain E Hydrophobic interactions: 6:K.3, 6:I.4, 9:E.16, 9:F.17, 9:F.17, 9:I.20, 9:F.21, 9:F.21, 8:F.18, 8:L.21, 8:L.24, E:F.22, E:L.26, E:L.26 CRT.111: 17 residues within 4Å: Chain 4: K.3, I.4 Chain 6: L.17, F.20, L.21, L.24, L.27, I.31 Chain 7: F.17, I.20, F.21, S.24 Chain 8: F.22, L.26, H.29, F.30 Ligands: BCL.112 14 PLIP interactions: 4 interactions with chain 7, 2 interactions with chain 4, 1 interactions with chain 8, 7 interactions with chain 6 Hydrophobic interactions: 7:F.17, 7:F.17, 7:I.20, 7:F.21, 4:K.3, 4:I.4, 8:H.29, 6:L.17, 6:F.20, 6:F.20, 6:L.21, 6:L.21, 6:L.24, 6:L.27

18 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.35: 8 residues within 4Å: Chain A: P.221 Chain C: V.289 Chain D: M.1, S.2, A.3, T.15 Chain K: I.31 Ligands: LMT.59 Ligand excluded by PLIP LMT.37: 7 residues within 4Å: Chain F: A.35, L.38, A.39, L.41, W.42 Ligands: BCL.36, BCL.114 Ligand excluded by PLIP LMT.44: 6 residues within 4Å: Chain F: L.46 Chain H: L.39, L.42, W.43 Ligands: BCL.38, BCL.42 Ligand excluded by PLIP LMT.49: 4 residues within 4Å: Chain J: L.42, W.43 Ligands: BCL.45, BCL.47 Ligand excluded by PLIP LMT.54: 8 residues within 4Å: Chain J: L.47 Chain L: A.35, L.38, A.39, L.41, W.42 Ligands: BCL.50, BCL.53 Ligand excluded by PLIP LMT.57: 7 residues within 4Å: Chain L: L.46 Chain N: A.35, L.38, L.41, W.42 Ligands: BCL.55, BCL.60 Ligand excluded by PLIP LMT.59: 10 residues within 4Å: Chain C: M.166, M.167, I.281, L.284, L.285, T.288 Chain M: S.34 Ligands: CDL.30, LMT.35, LDA.58 Ligand excluded by PLIP LMT.63: 8 residues within 4Å: Chain N: L.46 Chain O: S.44 Chain P: A.35, L.38, A.39, W.42 Ligands: BCL.61, BCL.65 Ligand excluded by PLIP LMT.68: 8 residues within 4Å: Chain P: L.46 Chain R: A.35, L.38, A.39, L.41, W.42 Ligands: BCL.66, BCL.69 Ligand excluded by PLIP LMT.77: 6 residues within 4Å: Chain R: L.46 Chain T: L.39, A.40, L.42, W.43 Ligands: BCL.74 Ligand excluded by PLIP LMT.81: 5 residues within 4Å: Chain V: L.39, L.42, W.43 Ligands: BCL.78, BCL.79 Ligand excluded by PLIP LMT.85: 6 residues within 4Å: Chain X: L.39, A.40, L.42, W.43 Ligands: BCL.82, BCL.83 Ligand excluded by PLIP LMT.90: 5 residues within 4Å: Chain X: L.47 Chain Z: L.39, A.40, W.43 Ligands: BCL.88 Ligand excluded by PLIP LMT.95: 7 residues within 4Å: Chain 1: A.35, L.38, L.41, W.42 Chain Z: L.47 Ligands: BCL.91, BCL.94 Ligand excluded by PLIP LMT.99: 8 residues within 4Å: Chain 1: L.46 Chain 2: P.49 Chain 3: A.35, L.38, A.39, W.42 Ligands: BCL.96, BCL.98 Ligand excluded by PLIP LMT.102: 7 residues within 4Å: Chain 3: L.46 Chain 5: A.35, L.38, A.39, W.42 Ligands: BCL.100, BCL.104 Ligand excluded by PLIP LMT.109: 7 residues within 4Å: Chain 5: L.46 Chain 7: A.35, L.38, L.41, W.42 Ligands: BCL.105, BCL.107 Ligand excluded by PLIP LMT.113: 7 residues within 4Å: Chain 7: L.46 Chain 9: A.35, L.38, L.41, W.42 Ligands: BCL.110, BCL.112 Ligand excluded by PLIP

6 x CA: CALCIUM ION(Non-covalent)

CA.43: 4 residues within 4Å: Chain F: W.45 Chain G: W.44, D.47, I.49 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain F Metal complexes: G:W.44, G:D.47, G:D.47, G:I.49, F:W.45 CA.48: 4 residues within 4Å: Chain H: W.46 Chain I: W.44, D.47, I.49 5 PLIP interactions: 4 interactions with chain I, 1 interactions with chain H Metal complexes: I:W.44, I:D.47, I:D.47, I:I.49, H:W.46 CA.75: 4 residues within 4Å: Chain R: W.45 Chain S: W.44, D.47, I.49 5 PLIP interactions: 4 interactions with chain S, 1 interactions with chain R Metal complexes: S:W.44, S:D.47, S:D.47, S:I.49, R:W.45 CA.80: 4 residues within 4Å: Chain T: W.46 Chain U: W.44, D.47, I.49 5 PLIP interactions: 1 interactions with chain T, 4 interactions with chain U Metal complexes: T:W.46, U:W.44, U:D.47, U:D.47, U:I.49 CA.84: 4 residues within 4Å: Chain V: W.46 Chain W: W.44, D.47, I.49 5 PLIP interactions: 4 interactions with chain W, 1 interactions with chain V Metal complexes: W:W.44, W:D.47, W:D.47, W:I.49, V:W.46 CA.89: 4 residues within 4Å: Chain X: W.46 Chain Y: W.44, D.47, I.49 5 PLIP interactions: 1 interactions with chain X, 4 interactions with chain Y Metal complexes: X:W.46, Y:W.44, Y:D.47, Y:D.47, Y:I.49

2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.58: 5 residues within 4Å: Chain M: I.31, S.34, P.36 Ligands: LMT.59, LDA.64 1 PLIP interactions: 1 interactions with chain M Hydrophobic interactions: M:I.31 LDA.64: 5 residues within 4Å: Chain C: L.103 Chain M: I.31 Chain O: F.30, L.33 Ligands: LDA.58 5 PLIP interactions: 1 interactions with chain M, 3 interactions with chain O, 1 interactions with chain C Hydrophobic interactions: M:I.31, O:F.30, O:F.30, O:L.33, C:L.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tani, K. et al., A Ca 2+ -binding motif underlies the unusual properties of certain photosynthetic bacterial core light-harvesting complexes. J.Biol.Chem. (2022)

Release Date

2022-05-04

Peptides

Photosynthetic reaction center cytochrome c subunit: A
Photosynthetic reaction center L subunit: B
Photosynthetic reaction center M subunit: C
Photosynthetic reaction center H subunit: D
Light-harvesting protein LH1 alpha2: EKMOQ0468
Light-harvesting protein LH1 beta1: FLNPR13579
Light-harvesting protein LH1 alpha1: GISUWY
Light-harvesting protein LH1 beta3: HJTVXZ
Light-harvesting protein LH1 alpha3: 2

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
L

C
M

D
H

E
A

K
I

M
K

O
O

Q
Q

0
1

4
5

6
7

8
9

F
B

L
J

N
N

P
P

R
R

1
2

3
4

5
6

7
8

9
0

G
D

I
F

S
S

U
U

W
W

Y
Y

H
E

J
G

T
T

V
V

X
X

Z
Z

2
3

Membrane

We predict this structure to be a membrane protein.
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Photosynthetic reaction center cytochrome c subunit

Photosynthetic reaction center L subunit

Photosynthetic reaction center M subunit

Photosynthetic reaction center H subunit

Light-harvesting protein LH1 alpha2

Light-harvesting protein LH1 beta1

Light-harvesting protein LH1 alpha1

Light-harvesting protein LH1 beta3

Light-harvesting protein LH1 alpha3

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