SMTL ID : 7vsi.1

Structure of human SGLT2-MAP17 complex bound with empagliflozin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x PLM: PALMITIC ACID(Covalent)

PLM.1: 6 residues within 4Å: Chain A: C.536, L.539, L.540, T.543, V.544, C.547 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.539, A:L.540, A:T.543, A:V.544 PLM.2: 3 residues within 4Å: Chain A: L.34, G.38, C.45 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.34, A:L.34

1 x 7R3: (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[[4-[(3S)-oxolan-3-yl]oxyphenyl]methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol(Non-covalent)

7R3.3: 20 residues within 4Å: Chain A: N.75, H.80, G.83, L.84, T.87, V.95, F.98, E.99, A.102, V.157, L.274, V.286, S.287, Y.290, W.291, K.321, F.453, D.454, Q.457, Y.526 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.84, A:F.98, A:F.98 Hydrogen bonds: A:N.75, A:T.87, A:E.99, A:K.321, A:Q.457 pi-Stacking: A:F.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niu, Y. et al., Structural basis of inhibition of the human SGLT2-MAP17 glucose transporter. Nature (2022)

Release Date

2021-12-15

Peptides

Sodium/glucose cotransporter 2: A
PDZK1-interacting protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Sodium/glucose cotransporter 2

PDZK1-interacting protein 1

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