SMTL ID : 7vud.1

Carotenoid Cleavage Dioxygenase 1 from Osmanthus fragrans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

3 x OXN: OXTOXYNOL-10(Non-covalent)

OXN.1: 24 residues within 4Å: Chain A: W.114, F.115, I.157, N.191, T.192, E.206, A.207, Y.255, M.286, H.288, F.319, F.353, H.354, L.372, L.377, V.380, F.391, N.393, D.418, F.419, L.439, I.442, A.443, F.543 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.115, A:F.115, A:F.353, A:D.418, A:F.543 Hydrogen bonds: A:Y.255, A:Y.255 pi-Stacking: A:F.353 OXN.2: 8 residues within 4Å: Chain A: I.342, K.343, W.344, F.345, L.402, Q.403, N.404, G.405 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.344 OXN.3: 4 residues within 4Å: Chain A: S.38, T.42, L.178, K.179 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.42, A:L.178 Hydrogen bonds: A:S.38

1 x NI: NICKEL (II) ION(Non-covalent)

NI.4: 4 residues within 4Å: Chain A: H.240, H.288, H.354, H.544 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.240, A:H.288, A:H.354, A:H.544, H2O.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: K.34 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.34 SO4.6: 6 residues within 4Å: Chain A: H.88, P.90, E.91, C.92, R.490, Y.502 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.91, A:R.490, A:Y.502 Salt bridges: A:H.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, D. et al., Carotenoid Cleavage Dioxygenase 1 from Osmanthus fragrans. To Be Published

Release Date

2022-11-02

Peptides

Carotenoid cleavage dioxygenase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carotenoid cleavage dioxygenase 1