SMTL ID : 7vvp.1

Crystal structure of SARS-Cov-2 main protease in complex with PF07304814

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

1 x 80I: [(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate(Non-covalent)

80I.1: 17 residues within 4Å: Chain B: T.24, H.39, F.138, L.139, N.140, G.141, S.142, C.143, H.161, H.162, M.163, E.164, H.170, R.186, Q.187, T.188, A.189 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:H.39, B:M.163, B:E.164, B:A.189 Hydrogen bonds: B:T.24, B:F.138, B:G.141, B:S.142, B:S.142, B:C.143, B:H.162, B:E.164, B:E.164, B:Q.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Structural Basis of Main Proteases of Coronavirus Bound to Drug Candidate PF-07304814. J.Mol.Biol. (2022)

Release Date

2022-08-24

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase

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