SMTL ID : 7vvy.1

TRA module of NuA4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain B: D.159 Ligands: ATP.2 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain C: Q.137 Ligands: ATP.4 No protein-ligand interaction detected (PLIP)

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 18 residues within 4Å: Chain B: G.22, S.23, Y.24, T.25, G.161, H.162, D.163, T.164, G.187, Q.240, K.243, E.244, G.412, G.413, T.414, I.417, Q.449 Ligands: MG.1 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:S.23, B:Y.24, B:Y.24, B:T.25, B:H.162, B:H.162, B:D.163, B:T.164, B:Q.240, B:K.243, B:G.413, B:T.414 ATP.4: 20 residues within 4Å: Chain C: G.13, S.14, G.15, M.16, K.18, D.154, S.155, G.156, D.157, V.159, G.182, K.213, E.214, G.301, G.302, T.303, M.305, F.306, K.336 Ligands: MG.3 16 PLIP interactions: 16 interactions with chain C Hydrogen bonds: C:S.14, C:G.15, C:M.16, C:M.16, C:Q.137, C:D.154, C:D.157, C:D.157, C:K.213, C:G.302, C:T.303, C:M.305, C:K.336 Salt bridges: C:K.18, C:K.18 pi-Stacking: C:F.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qu, K. et al., Structure of the NuA4 acetyltransferase complex bound to the nucleosome. Nature (2022)

Release Date

2022-08-10

Peptides

Chromatin modification-related protein EAF1: A
Actin-related protein 4: B
Actin: C
SWR1-complex protein 4: D
Enhancer of polycomb-like protein 1: E
Transcription-associated protein 1: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
K

E
H

F
L

Chromatin modification-related protein EAF1

Actin-related protein 4

Actin

SWR1-complex protein 4

Enhancer of polycomb-like protein 1

Transcription-associated protein 1

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