SMTL ID : 7vws.1 (1 other biounit)

Carbazole Prenyl Transferase LvqB4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.212, D.216 Ligands: MG.2, 83B.4 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.212, A:D.216, H2O.6, H2O.7 MG.2: 4 residues within 4Å: Chain A: D.212, D.216 Ligands: MG.1, 83B.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.212, A:D.216, H2O.1, H2O.3, H2O.4

1 x AO6: 2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione(Non-covalent)

AO6.3: 17 residues within 4Å: Chain A: F.74, I.75, V.78, T.179, P.182, A.183, I.186, F.190, I.205, F.208, Q.209, D.212, F.288, M.289, D.292, H.296 Ligands: 83B.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.75, A:I.186, A:I.205, A:F.208, A:F.208 Water bridges: A:V.178, A:T.179

1 x 83B: [(3S)-3,7-dimethyloct-6-enyl] phosphono hydrogen phosphate(Non-covalent)

83B.4: 11 residues within 4Å: Chain A: R.56, I.75, V.78, A.79, D.82, D.86, D.212, D.216 Ligands: MG.1, MG.2, AO6.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.212 Water bridges: A:D.212 Salt bridges: A:R.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagata, R. et al., Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-Like Enzymes. Angew.Chem.Int.Ed.Engl. (2022)

Release Date

2022-03-23

Peptides

LvqB4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LvqB4

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