SMTL ID : 7vx5.1

ACE2-RBD in SARS-CoV-2 Kappa variant S-ACE2 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.375, H.379, E.403 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.375, A:H.379, A:E.403, A:E.403

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: S.421, D.544, S.546, N.547 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.421, A:S.421, A:S.421, A:N.547 NAG.3: 4 residues within 4Å: Chain A: K.27, N.91, T.93, V.94 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.27, A:T.93, A:T.93 NAG.4: 2 residues within 4Å: Chain A: K.310, N.323 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain A: N.54, T.56, E.58, Q.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.54, A:T.56, A:E.58, A:E.58, A:Q.341 NAG.6: 4 residues within 4Å: Chain B: F.338, G.339, F.342, N.343 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.338, B:F.342 Hydrogen bonds: B:N.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Conformational dynamics of the Beta and Kappa SARS-CoV-2 spike proteins and their complexes with ACE2 receptor revealed by cryo-EM. Nat Commun (2021)

Release Date

2021-12-01

Peptides

Angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Angiotensin-converting enzyme 2

Spike glycoprotein

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