SMTL ID : 7w0g.1

Human PPAR delta ligand binding domain in complex with a synthetic agonist H11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.44 Å

Oligo State

homo-dimer

Ligands

2 x 85B: 2-[2,6-dimethyl-4-[[5-oxidanylidene-4-[4-(trifluoromethyloxy)phenyl]-1,2,4-triazol-1-yl]methyl]phenoxy]-2-methyl-propanoic acid(Non-covalent)

85B.1: 21 residues within 4Å: Chain A: I.54, L.60, W.69, V.86, F.87, R.89, C.90, Q.91, T.93, T.94, H.128, F.132, L.135, L.144, V.146, V.153, I.169, H.254, M.258, L.274, Y.278 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.87, A:F.87, A:R.89, A:T.94, A:F.132, A:V.146, A:V.153 Hydrogen bonds: A:Y.278 Salt bridges: A:H.128, A:H.254 pi-Cation interactions: A:K.172 85B.2: 20 residues within 4Å: Chain B: I.54, L.60, W.69, V.86, F.87, R.89, C.90, Q.91, T.93, T.94, H.128, F.132, L.135, L.144, V.146, V.153, H.254, M.258, L.274, Y.278 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:V.86, B:F.87, B:F.87, B:R.89, B:T.94, B:F.132, B:V.146, B:V.153 Hydrogen bonds: B:T.93 Salt bridges: B:H.128, B:H.254 pi-Cation interactions: B:K.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, Z. et al., Design, Synthesis, and Biological Evaluation of Triazolone Derivatives as Potent PPAR alpha / delta Dual Agonists for the Treatment of Nonalcoholic Steatohepatitis. J.Med.Chem. (2022)

Release Date

2022-02-02

Peptides

Peroxisome proliferator-activated receptor delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor delta

Related Entries With Identical Sequence