SMTL ID : 7w0k.1

plant glycosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 18 residues within 4Å: Chain A: G.26, N.29, E.261, Y.281, S.283, G.285, S.286, V.312, W.353, C.354, Q.356, H.371, G.373, W.374, N.375, S.376, E.379 Ligands: GOL.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.26, A:N.29, A:Y.281, A:S.286, A:I.287, A:C.354, A:C.354, A:Q.356, A:N.375, A:N.375, A:S.376, A:E.379 Water bridges: A:F.284, A:L.357, A:L.357, A:H.371 Salt bridges: A:H.371, A:H.371 pi-Stacking: A:W.353

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: G.26, H.27, T.144, Q.145, G.373, W.374, D.395, Q.396 Ligands: UDP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.26, A:T.144, A:W.374, A:D.395, A:Q.396 GOL.3: 6 residues within 4Å: Chain A: A.366, P.386, V.436, C.437, G.442, K.446 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.366 Water bridges: A:V.436, A:K.443, A:K.446 GOL.4: 5 residues within 4Å: Chain A: R.185, D.186, K.401, Q.404, D.405 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.185, A:D.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, W. et al., Functional and Structural Dissection of a Plant Steroid 3-O-Glycosyltransferase Facilitated the Engineering Enhancement of Sugar Donor Promiscuity. Acs Catalysis (2022)

Release Date

2022-03-02

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase

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