- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-mer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)
BEF.2: 9 residues within 4Å:- Chain A: P.33, N.34, G.35, S.36, K.38, E.1157
- Chain B: S.1116, G.1117
- Ligands: ADP.1
No protein-ligand interaction detected (PLIP)BEF.4: 8 residues within 4Å:- Chain A: S.1129
- Chain B: R.33, G.35, S.36, G.37, K.38, Q.141
- Ligands: ADP.3
No protein-ligand interaction detected (PLIP)- 11 x ZN: ZINC ION(Non-covalent)
ZN.5: 5 residues within 4Å:- Chain H: C.268, L.270, C.271, H.284, H.288
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.268, H:C.271, H:H.284, H:H.288
ZN.6: 4 residues within 4Å:- Chain H: C.296, C.299, H.312, H.316
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.296, H:C.299, H:H.312, H:H.316
ZN.7: 4 residues within 4Å:- Chain H: C.324, C.327, H.340, H.345
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.324, H:C.327, H:H.340, H:H.345
ZN.8: 4 residues within 4Å:- Chain H: C.353, C.356, H.369, H.373
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.353, H:C.356, H:H.369, H:H.373
ZN.9: 5 residues within 4Å:- Chain H: C.381, L.383, C.384, H.397, H.401
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.381, H:C.384, H:H.397, H:H.401
ZN.10: 4 residues within 4Å:- Chain H: C.409, C.412, H.425, H.430
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.409, H:C.412, H:H.425, H:H.430
ZN.11: 4 residues within 4Å:- Chain H: C.439, C.442, H.455, H.460
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.439, H:C.442, H:H.455, H:H.460
ZN.12: 5 residues within 4Å:- Chain H: C.469, Y.471, C.472, H.485, H.489
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.469, H:C.472, H:H.485, H:H.489
ZN.13: 5 residues within 4Å:- Chain H: C.497, Q.499, C.500, H.513, H.517
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.497, H:C.500, H:H.513, H:H.517
ZN.14: 4 residues within 4Å:- Chain H: C.525, C.528, H.541, H.546
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.525, H:C.528, H:H.541, H:H.546
ZN.15: 5 residues within 4Å:- Chain H: C.557, C.560, G.561, H.573, C.577
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.557, H:C.560, H:H.573, H:C.577
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, H. et al., CTCF and R-loops are boundaries of cohesin-mediated DNA looping. Mol.Cell (2023)
- Release Date
- 2023-05-31
- Peptides
- Structural maintenance of chromosomes protein 1A: A
Structural maintenance of chromosomes protein 3: B
Double-strand-break repair protein rad21 homolog: C
Cohesin subunit SA-1: D
Nipped-B-like protein: E
Transcriptional repressor CTCF: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EH
H
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-mer
- Ligands
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)
- 11 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, H. et al., CTCF and R-loops are boundaries of cohesin-mediated DNA looping. Mol.Cell (2023)
- Release Date
- 2023-05-31
- Peptides
- Structural maintenance of chromosomes protein 1A: A
Structural maintenance of chromosomes protein 3: B
Double-strand-break repair protein rad21 homolog: C
Cohesin subunit SA-1: D
Nipped-B-like protein: E
Transcriptional repressor CTCF: H - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EH
H