SMTL ID : 7w3d.1

Crystal structure of BRD4 bromodomain 1 (BD1) in complex with N2-(1,2,3-benzotriazol-5-yl)-N3-(dimethylsulfamoyl)-N6-[(2S)-1-methoxypropan-2-yl]pyridine-2,3,6-triamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x 89T: N2-(1,2,3-benzotriazol-5-yl)-N3-(dimethylsulfamoyl)-N6-[(2S)-1-methoxypropan-2-yl]pyridine-2,3,6-triamine(Non-covalent)

89T.1: 15 residues within 4Å: Chain A: W.40, P.41, Q.44, P.45, V.46, D.47, K.50, L.51, Y.56, C.95, Y.98, N.99, D.104, I.105, M.108 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:P.41, A:V.46, A:L.51, A:L.51 Hydrogen bonds: A:P.41, A:P.41, A:Q.44, A:D.47, A:N.99 Water bridges: A:Y.56, A:Y.56 Salt bridges: A:D.47 pi-Stacking: A:W.40, A:Y.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pandit, N. et al., Discovery of BET specific bromodomain inhibitors with a novel scaffold. Bioorg.Med.Chem. (2022)

Release Date

2022-09-07

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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