SMTL ID : 7w46.1

Crystal structure of Bacillus subtilis YjoB with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: D.300 Chain B: Q.188, V.189, I.190, P.231, G.232, N.233, G.234, K.235, T.236, T.237, Y.348, F.375, A.376 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:I.190, B:G.232, B:N.233, B:N.233, B:G.234, B:K.235, B:T.236, B:T.237, B:T.237, B:N.315 Water bridges: B:Y.348, B:Y.348 Salt bridges: B:K.235 ADP.2: 14 residues within 4Å: Chain C: D.300 Chain D: Q.188, V.189, I.190, P.231, G.232, N.233, G.234, K.235, T.236, T.237, Y.348, F.375, A.376 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:I.190, D:G.232, D:N.233, D:N.233, D:G.234, D:K.235, D:T.236, D:T.237, D:T.237, D:N.315 Water bridges: D:Y.348, D:Y.348 Salt bridges: D:K.235 ADP.3: 14 residues within 4Å: Chain E: D.300 Chain F: Q.188, V.189, I.190, P.231, G.232, N.233, G.234, K.235, T.236, T.237, Y.348, F.375, A.376 13 PLIP interactions: 13 interactions with chain F Hydrogen bonds: F:I.190, F:G.232, F:N.233, F:N.233, F:G.234, F:K.235, F:T.236, F:T.237, F:T.237, F:N.315 Water bridges: F:Y.348, F:Y.348 Salt bridges: F:K.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kwon, E. et al., Crystal structure and biochemical analysis suggest that YjoB ATPase is a putative substrate-specific molecular chaperone. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-10-19

Peptides

Uncharacterized ATPase YjoB: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Uncharacterized ATPase YjoB

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