SMTL ID : 7w58.1

Crystal structure of acyl-carrier protein synthase from Mycobacterium smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-trimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: D.21, P.33, R.36, R.37 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.37, A:R.37 Water bridges: A:R.36, A:R.36 EDO.2: 2 residues within 4Å: Chain A: R.96, L.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.97 EDO.4: 4 residues within 4Å: Chain B: D.21, P.33, R.36, R.37 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.37, B:R.37 Water bridges: B:R.36, B:R.36 EDO.5: 2 residues within 4Å: Chain B: R.96, L.97 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.97 EDO.7: 4 residues within 4Å: Chain C: D.21, P.33, R.36, R.37 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.37, C:R.37 Water bridges: C:R.36, C:R.36 EDO.8: 2 residues within 4Å: Chain C: R.96, L.97 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:L.97

3 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.49, H.116 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.49, A:H.116, H2O.3, H2O.4, H2O.4 NI.6: 2 residues within 4Å: Chain B: H.49, H.116 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.49, B:H.116, H2O.7, H2O.7, H2O.7 NI.9: 2 residues within 4Å: Chain C: H.49, H.116 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.49, C:H.116, H2O.11, H2O.11, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhatia, I. et al., Identification, structure determination and analysis of Mycobacterium smegmatis acyl-carrier protein synthase (AcpS) crystallized serendipitously. Acta Crystallogr.,Sect.F (2022)

Release Date

2022-06-29

Peptides

4'-phosphopantetheinyl transferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

4'-phosphopantetheinyl transferase