SMTL ID : 7w5i.2 (1 other biounit)

The structure of trichobrasilenol synthase TaTC6 in complex with FPP-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.1: 17 residues within 4Å: Chain A: Y.116, I.135, D.139, Y.215, R.241, G.246, V.247, T.283, N.287, S.291, K.294, E.295, T.368, R.377, Y.378 Ligands: MG.8, MG.9 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.135, A:D.139, A:T.283, A:T.368 Hydrogen bonds: A:N.287, A:S.291, A:E.295, A:Y.378 Water bridges: A:R.241, A:R.241, A:R.377, A:R.377 Salt bridges: A:R.241, A:K.294, A:R.377

3 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 2 residues within 4Å: Chain A: A.96, K.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.97 Water bridges: A:K.100 Salt bridges: A:K.100 MLI.3: 3 residues within 4Å: Chain A: F.75, I.79, D.80 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.79 MLI.4: 6 residues within 4Å: Chain A: R.207, Q.210, E.211, D.214, R.267, R.268 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.210 Hydrogen bonds: A:E.211 Water bridges: A:R.267, A:R.267 Salt bridges: A:R.267, A:R.268

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: M.258, F.260, K.349, N.352, N.353, E.356 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.349 Water bridges: A:K.349, A:N.352 GOL.6: 4 residues within 4Å: Chain A: S.344, T.345, T.346, D.347 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.345 Water bridges: A:T.345, A:T.346 GOL.7: 4 residues within 4Å: Chain A: R.268, H.269, E.270, E.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.268 Water bridges: A:E.270

2 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 5 residues within 4Å: Chain A: R.241, N.287, S.291, E.295 Ligands: FPP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.291, A:E.295, H2O.5 MG.9: 2 residues within 4Å: Chain A: E.295 Ligands: FPP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.295, H2O.1, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, T. et al., Structural insights into the cyclization of unusual brasilane-type sesquiterpenes. Int.J.Biol.Macromol. (2022)

Release Date

2022-06-01

Peptides

Terpene cyclase 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Terpene cyclase 6

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