SMTL ID : 7w5m.1

Crystal structure of AtNASP in complex of H3 alpha3 helix peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.50, E.51, E.59, Y.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.51, A:E.59, A:Y.68

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 5 residues within 4Å: Chain A: F.22, E.25, L.26, K.29, R.48 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.25, A:K.29 PG4.3: 6 residues within 4Å: Chain A: K.203, M.206, A.236, A.239, E.240, E.243 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.203

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: E.24, R.53, N.66, R.70 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.66 Water bridges: A:R.53, A:N.66, A:N.66 Salt bridges: A:R.53, A:R.70 SO4.5: 4 residues within 4Å: Chain A: R.116, D.120, K.129, N.155 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.120, A:N.155 Water bridges: A:R.116, A:R.116 Salt bridges: A:R.116, A:K.129 SO4.6: 4 residues within 4Å: Chain A: E.138, R.177 Chain B: I.9, R.13 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Salt bridges: B:R.13, A:R.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Structural basis for histone H3 recognition by NASP in Arabidopsis. J Integr Plant Biol (2022)

Release Date

2022-05-18

Peptides

Tetratricopeptide repeat (TPR)-like superfamily protein: A
H3 alpha3 helix peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tetratricopeptide repeat (TPR)-like superfamily protein

H3 alpha3 helix peptide

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