SMTL ID : 7w7y.1

The crystal structure of human abl1 kinase domain in complex with ABL2-A5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x 8IW: 5-[3-(5-methanoyl-2-methoxy-4-oxidanyl-phenyl)-1~{H}-pyrrolo[2,3-b]pyridin-5-yl]-~{N},~{N}-dimethyl-pyridine-3-carboxamide(Covalent)

8IW.1: 15 residues within 4Å: Chain A: L.20, Y.25, V.28, A.41, K.43, V.71, T.87, E.88, F.89, M.90, T.91, G.93, N.94, L.142, F.154 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.20, A:L.20, A:Y.25, A:V.28, A:V.28, A:A.41, A:K.43, A:L.142, A:L.142, A:F.154, A:F.154 Hydrogen bonds: A:K.43, A:T.87, A:E.88, A:M.90, A:N.94 Water bridges: A:N.94 8IW.2: 16 residues within 4Å: Chain B: L.20, G.21, Y.25, V.28, A.41, K.43, V.71, T.87, E.88, F.89, M.90, T.91, G.93, N.94, L.142, F.154 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.20, B:L.20, B:V.28, B:V.28, B:K.43, B:L.142, B:L.142, B:F.154 Hydrogen bonds: B:G.21, B:K.43, B:K.43, B:T.87, B:E.88, B:M.90, B:N.94, B:N.94 pi-Stacking: B:F.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., Cell-Active, Reversible, and Irreversible Covalent Inhibitors That Selectively Target the Catalytic Lysine of BCR-ABL Kinase. Angew.Chem.Int.Ed.Engl. (2022)

Release Date

2022-04-27

Peptides

Tyrosine-protein kinase ABL1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase ABL1