SMTL ID : 7w9z.1

Crystal structure of Bacillus subtilis YugJ in complex with NADP and nitrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.44, G.45, G.46, S.47, P.76, N.77, P.78, G.103, G.104, S.105, D.108, T.144, L.145, T.148, S.150, N.153, G.155, S.156, V.157, K.166, N.185, T.188, V.189, P.190, H.193, D.200, W.270, H.287 Ligands: NO3.2 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:G.45, A:S.47, A:S.47, A:S.47, A:N.77, A:G.103, A:G.104, A:S.105, A:S.105, A:D.108, A:T.144, A:N.153, A:K.166, A:K.166 Water bridges: A:G.44, A:I.48, A:I.48, A:R.50, A:R.50, A:R.50, A:N.77, A:G.103, A:V.106, A:D.108, A:D.108, A:T.144, A:T.144, A:T.188, A:T.188, A:T.188, A:H.193 NAP.4: 29 residues within 4Å: Chain B: G.44, G.45, G.46, S.47, P.76, N.77, P.78, G.103, G.104, S.105, D.108, T.144, L.145, T.148, S.150, N.153, G.155, S.156, V.157, K.166, N.185, T.188, V.189, P.190, H.193, D.200, W.270, H.287 Ligands: NO3.5 30 PLIP interactions: 30 interactions with chain B Hydrogen bonds: B:G.45, B:S.47, B:S.47, B:N.77, B:G.103, B:G.104, B:S.105, B:S.105, B:D.108, B:T.144, B:N.153, B:K.166, B:K.166, B:T.188 Water bridges: B:G.44, B:G.46, B:I.48, B:R.50, B:R.50, B:R.50, B:R.50, B:R.50, B:N.77, B:G.103, B:V.106, B:T.144, B:T.144, B:T.144, B:T.188, B:T.188

4 x NO3: NITRATE ION(Non-functional Binders)

NO3.2: 6 residues within 4Å: Chain A: V.157, W.270, H.273, H.277, H.287 Ligands: NAP.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.269 NO3.3: 7 residues within 4Å: Chain A: R.79, V.80, S.81, T.159, N.160, W.161, E.162 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:V.80, A:S.81, A:S.81, A:N.160, A:W.161, A:E.162 Water bridges: A:S.81, A:S.81 NO3.5: 7 residues within 4Å: Chain B: V.157, K.166, W.270, H.273, H.277, H.287 Ligands: NAP.4 No protein-ligand interaction detected (PLIP) NO3.6: 7 residues within 4Å: Chain B: R.79, V.80, S.81, T.159, N.160, W.161, E.162 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:V.80, B:S.81, B:S.81, B:N.160, B:W.161, B:E.162, B:E.162 Water bridges: B:S.81, B:S.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.Y. et al., Structural and Biochemical Analysis of the Furan Aldehyde Reductase YugJ from Bacillus subtilis. Int J Mol Sci (2022)

Release Date

2022-12-07

Peptides

Iron-containing alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Iron-containing alcohol dehydrogenase

Related Entries With Identical Sequence