SMTL ID : 7wag.1

Crystal structure of MurJ squeezed form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

13 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 6 residues within 4Å: Chain A: M.462, I.465, M.466, P.467, L.471 Ligands: OLC.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.465, A:P.467 OLC.2: 8 residues within 4Å: Chain A: V.112, I.252, F.253, F.256, L.257, I.402, G.403, K.406 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.252, A:F.253, A:F.256, A:F.256, A:L.257, A:I.402 Hydrogen bonds: A:K.406 Salt bridges: A:K.406 OLC.4: 4 residues within 4Å: Chain A: F.174, F.182, W.191 Ligands: OLC.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.174, A:F.182, A:W.191, A:W.191, A:W.191 OLC.5: 3 residues within 4Å: Chain A: I.133, P.136, W.191 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.133, A:P.136, A:W.191, A:W.191 OLC.6: 3 residues within 4Å: Chain A: M.103, L.104, K.132 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.104, A:K.132 OLC.7: 6 residues within 4Å: Chain A: G.173, F.174, A.178, Y.181, F.182 Ligands: OLC.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.174, A:F.174, A:A.178, A:F.182, A:F.182 OLC.8: 8 residues within 4Å: Chain A: S.88, L.139, L.143, V.147, L.201, L.208, M.213, V.215 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.139, A:L.143, A:V.147, A:L.201, A:L.208 OLC.9: 4 residues within 4Å: Chain A: Y.426, R.430 Ligands: OLC.13, OLC.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.430 OLC.10: 5 residues within 4Å: Chain A: G.326, I.327, I.355, S.358, V.359 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.355 OLC.11: 5 residues within 4Å: Chain A: K.381, T.382, K.385, V.389, W.427 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.385, A:V.389, A:W.427 OLC.12: 5 residues within 4Å: Chain A: W.476, L.479, R.480, A.483 Ligands: OLC.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.476, A:L.479, A:A.483 Hydrogen bonds: A:R.480 OLC.13: 5 residues within 4Å: Chain A: S.423, Y.426, W.427, R.430 Ligands: OLC.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.426, A:W.427, A:R.430 OLC.14: 15 residues within 4Å: Chain A: L.311, F.315, I.362, V.366, C.419, A.422, S.423, Y.426, P.437, Q.438, P.439, G.440, W.441, M.442 Ligands: OLC.9 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.311, A:F.315, A:I.362, A:V.366, A:A.422, A:Y.426, A:W.441, A:W.441, A:W.441 Hydrogen bonds: A:G.440, A:W.441

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: M.349, R.352, L.405, H.407 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohga, H. et al., Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms. Structure (2022)

Release Date

2022-06-01

Peptides

Lipid II flippase MurJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Lipid II flippase MurJ