SMTL ID : 7wal.1

Glutamyl-tRNA synthetase from Plasmodium falciparum (PfERS) in complex with Co

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

8 x CO: COBALT (II) ION(Non-covalent)

CO.1: 1 residues within 4Å: Chain A: Q.147 No protein-ligand interaction detected (PLIP) CO.2: 1 residues within 4Å: Chain A: H.412 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.412 CO.3: 3 residues within 4Å: Chain A: N.462, N.464, H.467 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.467 CO.4: 1 residues within 4Å: Chain A: E.42 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.42 CO.5: 1 residues within 4Å: Chain A: H.442 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.442 CO.6: 1 residues within 4Å: Chain A: E.62 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.62 CO.7: 3 residues within 4Å: Chain A: D.500, H.506 Ligands: CO.8 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.500, A:H.506 CO.8: 4 residues within 4Å: Chain A: D.500, H.504, H.506 Ligands: CO.7 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.500

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 2 residues within 4Å: Chain A: M.247, S.248 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain A: K.29, S.238 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: R.277 Ligand excluded by PLIP

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.12: 8 residues within 4Å: Chain A: P.16, R.48, D.50, T.52, S.82, Y.191, C.195, I.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.52, A:S.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, V.K. et al., Structural characterization of glutamyl-tRNA synthetase (GluRS) from Plasmodium falciparum. Mol.Biochem.Parasitol. (2022)

Release Date

2022-12-21

Peptides

Glutamyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamyl-tRNA synthetase

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