SMTL ID : 7waq.1 (1 other biounit)

SbSOMT in complex with resveratrol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.56 Å

Oligo State

homo-dimer

Ligands

2 x STL: RESVERATROL(Non-covalent)

STL.1: 14 residues within 4Å: Chain A: M.142, I.143, F.148, M.174, F.188, M.192, W.278, H.281, D.282, Y.310, L.328, M.332, T.335 Chain B: L.27 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.143, A:I.143, A:F.188, A:L.328 Hydrogen bonds: A:D.282, B:L.27 Water bridges: A:Y.310 pi-Stacking: A:W.278 STL.4: 13 residues within 4Å: Chain A: L.27 Chain B: M.142, I.143, M.174, F.188, M.192, W.278, H.281, D.282, Y.310, L.328, M.332, T.335 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.143, B:F.188, B:W.278, B:L.328 Hydrogen bonds: B:D.282, B:Y.310, B:T.335

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: L.280, H.281, E.309, Y.310, K.340, E.341, R.342, F.347 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.280, A:E.341, A:R.342, A:R.342, A:R.342 EDO.3: 4 residues within 4Å: Chain A: R.270, H.300, V.301, K.376 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.270, A:R.270, A:H.300, A:V.301, A:K.376, A:K.376 EDO.5: 8 residues within 4Å: Chain B: L.280, H.281, E.309, Y.310, K.340, E.341, R.342, F.347 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.310, B:E.341, B:R.342, B:R.342, B:R.342 Water bridges: B:H.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lui, A.C.W. et al., Regioselective stilbene O-methylations in Saccharinae grasses. Nat Commun (2023)

Release Date

2022-12-21

Peptides

stilbene O-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
B

stilbene O-methyltransferase

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