SMTL ID : 7waw.1

MurJ inward closed form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

5 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 8 residues within 4Å: Chain A: F.315, M.362, V.366, L.423, Y.426, P.437, W.441 Ligands: OLC.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.315, A:V.366, A:L.423, A:Y.426, A:Y.426, A:W.441 Hydrogen bonds: A:Y.426, A:Y.426 OLC.2: 6 residues within 4Å: Chain A: L.104, P.107, W.108, Y.111, F.124, R.132 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.107, A:W.108, A:W.108, A:W.108 OLC.3: 11 residues within 4Å: Chain A: R.52, F.55, A.56, F.60, S.61, L.91, L.95, F.135, S.142, S.145, L.146 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.52, A:R.52, A:F.55, A:F.55, A:A.56, A:F.60, A:F.60, A:L.91, A:L.91, A:L.95, A:F.135 OLC.4: 10 residues within 4Å: Chain A: F.22, A.26, I.27, R.30, L.274, A.324, L.332, M.474, I.478, V.485 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.22, A:L.274, A:A.324, A:L.332, A:I.478, A:V.485 Hydrogen bonds: A:R.30 OLC.5: 6 residues within 4Å: Chain A: F.315, L.423, Y.426, W.427, L.445 Ligands: OLC.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.315, A:L.445 Hydrogen bonds: A:W.427

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kohga, H. et al., Crystal structure of the lipid flippase MurJ in a "squeezed" form distinct from its inward- and outward-facing forms. Structure (2022)

Release Date

2022-06-01

Peptides

lipid II flippase MurJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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lipid II flippase MurJ

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