SMTL ID : 7wbg.2 (1 other biounit)

BF2*1901/RY8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ARG- ARG- ARG- GLU- GLN- THR- ASP- TYR: ARG-ARG-ARG-GLU-GLN-THR-ASP-TYR(Non-covalent)

ARG-ARG-ARG-GLU-GLN-THR-ASP-TYR.1: 31 residues within 4Å: Chain A: Y.7, D.24, T.34, H.35, Y.36, A.43, Y.58, S.61, E.62, T.65, S.66, R.68, S.69, I.72, D.73, G.76, I.79, R.83, V.93, W.95, Y.97, R.111, Y.113, T.140, K.143, W.144, Y.149, G.152, Y.156, W.164, Y.168 39 PLIP interactions: 39 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.58, A:I.72, A:I.79, A:W.95, A:W.144, A:Y.149, A:Y.156, A:Y.156, A:W.164 Hydrogen bonds: A:Y.7, A:T.34, A:T.34, A:T.34, A:E.62, A:D.73, A:Y.97, A:Y.97, A:R.111, A:R.111, A:K.143, A:Y.149, A:Y.156, A:Y.168 Water bridges: A:T.65, A:T.65, A:T.65, A:T.65, A:R.68, A:S.69, A:Y.156, A:W.164 Salt bridges: A:D.24, A:E.62, A:E.62, A:R.68, A:R.83, A:K.143, A:K.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, L. et al., A Wider and Deeper Peptide-Binding Groove for the Class I Molecules from B15 Compared with B19 Chickens Correlates with Relative Resistance to Marek's Disease. J Immunol. (2023)

Release Date

2022-12-21

Peptides

MHC class I alpha chain 2: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

MHC class I alpha chain 2

Beta-2-microglobulin

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