SMTL ID : 7wbz.1

Crystal structure of the SARS-Cov-2 RBD in complex with Fab 2303

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.20, G.21, F.24, N.25, L.50 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.24, A:L.50 Hydrogen bonds: A:N.25 Water bridges: A:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, R. et al., Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies. Commun Biol (2022)

Release Date

2022-08-31

Peptides

Spike protein S1: A
2303 heavy chain: B
2303 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S1

2303 heavy chain

2303 light chain

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