SMTL ID : 7wc2.1 (3 other biounits)

Cryo-EM structure of alphavirus, Getah virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

12 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.1: 2 residues within 4Å: Chain C: R.134, N.141 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.2: 6 residues within 4Å: Chain C: C.63, E.99 Chain D: N.200, T.202, N.207, V.208 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.99 NAG-NAG-BMA-MAN-MAN.3: 4 residues within 4Å: Chain C: N.264 Chain D: L.260, T.261, N.262 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.264 NAG-NAG-BMA-MAN-MAN.4: 2 residues within 4Å: Chain E: R.134, N.141 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.5: 3 residues within 4Å: Chain E: C.63, E.99 Chain F: N.200 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.6: 6 residues within 4Å: Chain E: K.115, H.116, H.118, N.264 Chain F: N.262 Ligands: NAG-NAG-BMA-MAN-MAN.12 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.7: 2 residues within 4Å: Chain G: R.134, N.141 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.8: 5 residues within 4Å: Chain G: C.63, C.96, E.99 Chain H: N.200, T.202 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:E.99, G:E.99 NAG-NAG-BMA-MAN-MAN.9: 5 residues within 4Å: Chain G: H.116, N.264 Chain H: L.260, T.261, N.262 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.10: 2 residues within 4Å: Chain A: R.134, N.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.134, A:R.134 NAG-NAG-BMA-MAN-MAN.11: 4 residues within 4Å: Chain A: C.63, E.99 Chain B: N.200, V.208 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.12: 5 residues within 4Å: Chain A: K.115, H.116 Chain B: L.260, N.262 Ligands: NAG-NAG-BMA-MAN-MAN.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.115, A:K.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, M. et al., Implications for the pathogenicity and antigenicity of alpha viruses revealed by a 3.5 angstrom Cryo-EM structure of Getah virus. To Be Published

Release Date

2022-11-02

Peptides

Spike glycoprotein E1: ACEG
Spike glycoprotein E2: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

E
G

G
J

B
B

D
E

F
H

H
K

Spike glycoprotein E1

Spike glycoprotein E2

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