SMTL ID : 7wc6.1

Crystal structure of serotonin 2A receptor in complex with LSD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: E.207, D.211 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.207, A:D.211

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain A: I.314, T.315, M.318, C.326, N.327, I.331, L.334, F.338 Ligands: PEG.9 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.314, A:I.314, A:M.318, A:I.331, A:L.334, A:F.338 Hydrogen bonds: A:N.327

4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 5 residues within 4Å: Chain A: P.78, K.80, L.81, V.84, L.149 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.80, A:V.84, A:L.149 OLC.4: 9 residues within 4Å: Chain A: M.48, S.49, I.52, Y.87, L.91, F.127, I.130, W.134, V.138 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.52, A:F.127, A:I.130, A:I.130, A:W.134, A:W.134 OLC.7: 9 residues within 4Å: Chain A: V.90, I.140, P.143, I.144, F.147, K.154, F.168, G.172, S.176 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.143, A:F.147, A:F.147, A:F.147, A:F.147 Hydrogen bonds: A:S.176 OLC.8: 10 residues within 4Å: Chain A: S.11, L.14, T.15, V.18, I.69, Y.73, N.336, V.337, W.340, L.344 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.14, A:L.14, A:T.15, A:V.18, A:W.340, A:L.344 Hydrogen bonds: A:S.11

1 x 7LD: (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide(Non-covalent)

7LD.5: 17 residues within 4Å: Chain A: S.65, W.85, I.86, D.89, V.90, S.93, L.163, V.169, G.172, S.173, S.176, W.309, F.312, F.313, N.316, V.339, Y.343 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.85, A:W.85, A:I.86, A:D.89, A:V.90, A:L.163, A:F.312, A:V.339 Hydrogen bonds: A:G.172 Salt bridges: A:D.89 pi-Stacking: A:F.313

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.6: 5 residues within 4Å: Chain A: W.206, N.278, Q.282, G.285, S.289 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.278, A:Q.282

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 2 residues within 4Å: Chain A: N.327 Ligands: CLR.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.327 PEG.10: 6 residues within 4Å: Chain A: Y.73, S.160, L.162, D.329, A.333, N.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.336 PEG.11: 4 residues within 4Å: Chain A: N.41, N.44, V.297, N.357 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.41, A:N.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, D. et al., Structure-based discovery of nonhallucinogenic psychedelic analogs. Science (2022)

Release Date

2022-01-26

Peptides

5-hydroxytryptamine receptor 2A,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

5-hydroxytryptamine receptor 2A,Soluble cytochrome b562

Related Entries With Identical Sequence