SMTL ID : 7wcv.1

Co-crystal structure of FTO bound to 6e

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 13 residues within 4Å: Chain A: R.82, N.191, H.217, D.219, V.230, Y.281, V.295, R.302, S.304, T.306, R.308 Ligands: MN.2, 943.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.295, A:T.306 Hydrogen bonds: A:R.82, A:N.191, A:Y.281, A:S.304 Salt bridges: A:R.82, A:H.217, A:R.302, A:R.308

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.217, D.219, H.293 Ligands: AKG.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.217, A:D.219, A:H.293, H2O.1

1 x 943: 2-[[2,6-bis(chloranyl)-4-pyridin-4-yl-phenyl]amino]benzoic acid(Non-covalent)

943.3: 15 residues within 4Å: Chain A: I.71, T.78, P.79, R.82, Y.92, Y.94, L.95, K.202, V.214, S.215, H.217, H.218, D.219, E.220 Ligands: AKG.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.71, A:Y.94, A:Y.94, A:L.95, A:L.95, A:H.217 Hydrogen bonds: A:S.215, A:E.220 Salt bridges: A:K.202 pi-Cation interactions: A:H.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Structure-Activity Relationships and Antileukemia Effects of the Tricyclic Benzoic Acid FTO Inhibitors. J.Med.Chem. (2022)

Release Date

2022-07-06

Peptides

Alpha-ketoglutarate-dependent dioxygenase FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase FTO

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