SMTL ID : 7wcx.1

Crystal structure of FGFR4(V550M) kinase domain with 7v

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

monomer

Ligands

1 x 90F: ~{N}-[2-[[5-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-1~{H}-indazol-3-yl]amino]-3-fluoranyl-5-(4-morpholin-4-ylpiperidin-1-yl)phenyl]propanamide(Covalent)

90F.1: 15 residues within 4Å: Chain A: L.29, G.30, V.37, R.39, A.57, M.106, E.107, C.108, A.109, G.112, N.113, R.172, L.175, D.186 Ligands: SO4.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.29, A:V.37, A:V.37, A:A.57, A:L.175 Hydrogen bonds: A:R.39, A:E.107, A:A.109, A:A.109, A:A.109, A:N.113 pi-Cation interactions: A:R.172 Halogen bonds: A:L.29, A:D.186

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.172, T.202, N.204, R.206 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.202, A:T.202, A:N.204, A:N.204, A:R.206 Water bridges: A:N.113 Salt bridges: A:R.172 SO4.3: 4 residues within 4Å: Chain A: R.20, L.23, L.25, Y.103 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.23 Water bridges: A:L.25, A:L.25, A:Y.103 SO4.4: 2 residues within 4Å: Chain A: R.39 Ligands: 90F.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.39 SO4.5: 4 residues within 4Å: Chain A: R.119, R.122, G.243, S.244 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.244 Water bridges: A:R.119 Salt bridges: A:R.119, A:R.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, M. et al., Design, Synthesis, and Biological Evaluation of Aminoindazole Derivatives as Highly Selective Covalent Inhibitors of Wild-Type and Gatekeeper Mutant FGFR4. J.Med.Chem. (2022)

Release Date

2022-03-30

Peptides

Fibroblast growth factor receptor 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fibroblast growth factor receptor 4

Related Entries With Identical Sequence