SMTL ID : 7wd1.2 (1 other biounit)

Crystal structure of R14 bound to SARS-CoV-2 RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 5 residues within 4Å: Chain A: F.6, G.7, F.10, N.11, L.36 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.6, A:F.10, A:L.36 Hydrogen bonds: A:N.11 Water bridges: A:G.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Two pan-SARS-CoV-2 nanobodies and their multivalent derivatives effectively prevent Omicron infections in mice. Cell Rep Med (2023)

Release Date

2022-12-21

Peptides

Spike protein S1: A
R14: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Spike protein S1

R14

Related Entries With Identical Sequence