SMTL ID : 7wd2.1 (1 other biounit)

Crystal structure of S43 bound to SARS-CoV-2 RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: F.6, G.7, N.11, V.35 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain B: N.54, N.55 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Two pan-SARS-CoV-2 nanobodies and their multivalent derivatives effectively prevent Omicron infections in mice. Cell Rep Med (2023)

Release Date

2022-12-21

Peptides

Spike protein S1: A
Anti-RON nanobody: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Spike protein S1

Anti-RON nanobody

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