- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 12 x NDT: 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL(Non-covalent)
NDT.2: 8 residues within 4Å:- Chain A: M.266, Q.398, R.401, T.430, R.434
- Chain B: G.247, G.375
- Ligands: ATP.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:R.401, A:T.430
- Hydrogen bonds: A:R.401, A:T.430
- pi-Cation interactions: A:R.401, A:R.434
NDT.4: 3 residues within 4Å:- Chain A: V.697
- Chain B: S.520
- Ligands: ATP.3
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.697
- pi-Cation interactions: A:K.667
NDT.6: 9 residues within 4Å:- Chain B: M.266, Q.398, R.401, T.430, R.434
- Chain C: G.247, P.374, G.375
- Ligands: ATP.5
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:R.401, B:T.430
- Hydrogen bonds: B:T.430
- pi-Cation interactions: B:R.401
NDT.8: 4 residues within 4Å:- Chain B: L.537, K.667, V.697
- Ligands: ATP.7
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:V.697
- pi-Cation interactions: B:K.667
NDT.10: 8 residues within 4Å:- Chain C: Q.398, R.401, A.427, T.430, R.434
- Chain D: S.249, G.375
- Ligands: ATP.9
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:Q.398, C:Q.398, C:R.401, C:T.430
- Hydrogen bonds: C:T.430, D:S.249
- pi-Cation interactions: C:R.401
NDT.12: 4 residues within 4Å:- Chain C: L.537, K.667, A.694
- Ligands: ATP.11
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:A.694
- pi-Cation interactions: C:K.667
NDT.14: 8 residues within 4Å:- Chain D: M.266, Q.398, R.401, T.430, R.434
- Chain E: G.247, G.375
- Ligands: ATP.13
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:R.401, D:T.430
- Hydrogen bonds: D:R.401, D:R.401, D:T.430
- pi-Cation interactions: D:R.401, D:R.434
NDT.16: 7 residues within 4Å:- Chain D: L.537, K.667, C.668, A.694
- Chain E: P.644, G.645
- Ligands: ATP.15
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:K.667, D:A.694
- pi-Cation interactions: D:K.667
NDT.19: 8 residues within 4Å:- Chain E: Q.398, R.401, T.430
- Chain F: G.247, S.249, D.347, G.375
- Ligands: ATP.17
4 PLIP interactions:3 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:T.430, F:S.249
- pi-Cation interactions: E:R.401, E:R.434
NDT.20: 6 residues within 4Å:- Chain E: K.667, A.694, V.697
- Chain F: P.644, G.645
- Ligands: ATP.18
3 PLIP interactions:1 interactions with chain F, 2 interactions with chain E- Hydrophobic interactions: F:P.644, E:A.694, E:V.697
NDT.22: 8 residues within 4Å:- Chain A: G.247, S.249, G.375
- Chain F: Q.398, R.401, T.430, R.434
- Ligands: ATP.21
6 PLIP interactions:5 interactions with chain F, 1 interactions with chain A- Hydrophobic interactions: F:Q.398, F:Q.398, F:T.430
- Hydrogen bonds: F:T.430, A:S.249
- pi-Cation interactions: F:R.401
NDT.24: 7 residues within 4Å:- Chain A: P.644, G.645
- Chain F: L.537, K.667, C.668, V.697
- Ligands: ATP.23
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:K.667, F:V.697
- pi-Cation interactions: F:K.667
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ma, C. et al., Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition. Nat Commun (2022)
- Release Date
- 2022-12-14
- Peptides
- ATPase family gene 2 protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 12 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 12 x NDT: 2-(TOLUENE-4-SULFONYL)-2H-BENZO[D][1,2,3]DIAZABORININ-1-OL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ma, C. et al., Structural dynamics of AAA + ATPase Drg1 and mechanism of benzo-diazaborine inhibition. Nat Commun (2022)
- Release Date
- 2022-12-14
- Peptides
- ATPase family gene 2 protein: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F